BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 319232	206 (1.010)	24 (0.160) +TCATAATAAAATGCATATC	11/122	NT	12.9%	coding (368/405 nt)	USA300TCH1516_00272	hypothetical protein
*	?	USA300TCH1516_ALE	= 2432264	219 (1.080)	24 (0.160) +TCATAATAAAATGCATATC	11/122	NT	12.9%	intergenic (+611/+36)	birA_2/USA300HOU_RS12525	Bifunctional ligase/repressor BirA/hypothetical protein

Only 100 of 272 total aligned reads displayed.

CTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTAT  >  USA300TCH1516_ALE/2432174‑2432353

 tAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTc                                                                                          <  1:2635529/91‑1 (MQ=255)

  aaTTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCa                                                                                         >  1:2460902/1‑91 (MQ=255)

  aaTTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCa                                                                                         <  1:3739235/91‑1 (MQ=255)

    ttGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCAtt                                                                                       >  1:1737991/1‑91 (MQ=255)

    ttGAATCCTTATTTATTCAGTATCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCAtt                                                                                       <  2:2462587/91‑1 (MQ=255)

     tGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTg                                                                                      >  1:667432/1‑91 (MQ=255)

     ggAATCTTTATTTGTTCAGTGTCATAATGAGATGCAGATGAAAAAAGCTGATTTCTATCAAGTAAGTAGTAGAGATCGGCTTTTTTCAGTg                                                                                      <  2:1334050/90‑1 (MQ=16)

      gAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGc                                                                                     >  2:884438/1‑91 (MQ=255)

      gAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGc                                                                                     >  2:2788696/1‑91 (MQ=255)

        aTCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAACAGCTGATTTCTATCAAATAATTACTAGAAATCAGCTTATTTCCTTGCCt                                                                                   >  2:2996305/1‑91 (MQ=21)

        aTCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCt                                                                                   <  1:160441/91‑1 (MQ=255)

        aTCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCt                                                                                   >  1:3916573/1‑91 (MQ=255)

         tCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTa                                                                                  <  1:1673732/91‑1 (MQ=255)

           tttatttaTTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTaaa                                                                                >  1:2872007/1‑91 (MQ=255)

             tatttattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTaaaaa                                                                              <  2:2078316/91‑1 (MQ=255)

              atttattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAAc                                                                             <  1:2372037/91‑1 (MQ=255)

              atttattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAAc                                                                             <  1:2338532/91‑1 (MQ=255)

               tttattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACt                                                                            <  2:637011/91‑1 (MQ=255)

               tttattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACt                                                                            <  1:2294280/91‑1 (MQ=255)

                ttattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACtt                                                                           >  1:723974/1‑91 (MQ=255)

                 tattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTa                                                                          >  2:3227501/1‑91 (MQ=255)

                 tattCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCCAAAAACTTa                                                                          >  1:3553894/1‑91 (MQ=255)

                   ttCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAAt                                                                        >  1:3171644/1‑91 (MQ=255)

                    tCAGTTTCATAATAAAATGCATATCAAACAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATg                                                                       <  2:1489880/91‑1 (MQ=255)

                    tCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATg                                                                       >  1:2558700/1‑91 (MQ=255)

                     cAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGt                                                                      <  1:1221976/91‑1 (MQ=255)

                      aGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTc                                                                     <  1:1869209/91‑1 (MQ=255)

                        tttCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTccc                                                                   <  1:1483537/91‑1 (MQ=255)

                          acATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCATAAAAACTTAATGTCCCGa                                                                 <  2:3725824/90‑1 (MQ=255)

                           cATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGAc                                                                <  1:2120114/91‑1 (MQ=255)

                           cATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTGTTCATTGCCGAAAAACTTAATGTCCCGAc                                                                <  2:1128063/91‑1 (MQ=255)

                             taataaAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACct                                                              <  2:1530582/91‑1 (MQ=255)

                               ataaAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACctct                                                            <  1:2211600/91‑1 (MQ=255)

                                 aaaaTGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCttt                                                          >  2:1812194/1‑91 (MQ=255)

                                 aaaaTGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCttt                                                          >  2:204660/1‑91 (MQ=255)

                                  aaaTGCATATCAAGAAAGCTTATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACGTGATGTCCCGACCTCTTTa                                                         <  2:1150015/91‑1 (MQ=18)

                                  aaaTGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTa                                                         <  1:788733/91‑1 (MQ=255)

                                  aaaTGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTa                                                         <  2:3343265/91‑1 (MQ=255)

                                    aTGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATc                                                       <  1:2946876/91‑1 (MQ=255)

                                      gCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTa                                                     <  1:503221/91‑1 (MQ=255)

                                       cATATCAAATAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTAc                                                    >  1:1977237/1‑91 (MQ=255)

                                       cATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTAc                                                    <  1:3387800/91‑1 (MQ=255)

                                       cATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTAc                                                    >  1:316932/1‑91 (MQ=255)

                                        atatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACg                                                   >  2:1992964/1‑91 (MQ=255)

                                         tatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGc                                                  >  1:1936260/1‑91 (MQ=255)

                                              aaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAACACTTAATGTCCCGACCTCTTTATCTACGCAaaaa                                             >  2:168751/1‑91 (MQ=255)

                                              aaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATaaa                                             >  1:26184/1‑91 (MQ=255)

                                               aaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAAt                                            <  1:41602/91‑1 (MQ=255)

                                               aaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAAt                                            >  2:1438773/1‑91 (MQ=255)

                                                aaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATa                                           >  2:3205272/1‑91 (MQ=255)

                                                aaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATa                                           <  2:1555954/91‑1 (MQ=255)

                                                  ttcTGATTTCTATCATATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACt                                         <  2:3325790/89‑1 (MQ=255)

                                                  aGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACt                                         <  2:1619357/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACtt                                        >  1:2501911/1‑91 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACtt                                        <  2:696210/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACtt                                        <  1:2247527/91‑1 (MQ=255)

                                                     tGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgcattttattatgaaactgaataaataaagattcaattagcgcatcag                                      <  1:1585516‑M2/91‑54 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACttatt                                     >  2:1244222/1‑91 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACttatt                                     >  1:2039004/1‑91 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACttatt                                     >  1:891286/1‑91 (MQ=255)

                                                       aTTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgcattttattatgaaactgaataaataaagattcaattagcgcatcagta                                    <  2:2829172‑M2/91‑56 (MQ=255)

                                                        tttCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTAc                                   <  1:270532/91‑1 (MQ=255)

                                                        tttCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTAc                                   >  2:3077759/1‑91 (MQ=255)

                                                        tttCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTAc                                   >  2:2744201/1‑91 (MQ=255)

                                                           cTATCAAATAATTAATAGAAATCAGCTTTTTTgttatgcattttattatgaaactgaataaataaagattcaattagcgcatcagtattag                                <  2:220633‑M2/91‑60 (MQ=255)

                                                           cTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgcattttattatgaaactgaataaataaagattcaattagcgcatcagtattag                                <  1:3818525‑M2/91‑60 (MQ=255)

                                                            tATCAAATAATTAATAGAAATCAGCTTTTTTgatatgcattttattatgaaactgaataaataaagattcaattagcgcatcagtattagg                               <  1:1643214‑M2/91‑61 (MQ=255)

                                                             aTCAAATAATTAATAGAAATCAGCTTTTTTgatatgcattttattatgaaactgaataaataaagattcaattagcgcatcagtattagga                              <  2:397984‑M2/91‑62 (MQ=255)

                                                              tCAAATAATTAATAGAAATCAGCTTTTTTgatatgcattttattatgaaactgaataaataaagattcaattagcgcatcagtattaggat                             <  1:2098103‑M2/91‑63 (MQ=255)

                                                                aaaTAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGAAATaa                           >  2:35105/1‑91 (MQ=255)

                                                                  ataatTAATAGAAATCAGCTTTTTTCTTTTTCTAAAAACTTAATGTCCCGACCTCTTTATTTACGCATAAATACTTATTACTGATATAACg                         >  2:2495431/1‑91 (MQ=37)

                                                                    aattaatAGAAATCAGCTTTTTTgatatgcattttataatgaaactgaataaataaagattcaattagcgcatcagtattaggattcactc                       <  1:3334770‑M2/91‑69 (MQ=255)

                                                                    aattaatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaa                       >  1:32790/1‑91 (MQ=255)

                                                                     attaatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaa                      >  2:1065473/1‑91 (MQ=255)

                                                                     attaatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaa                      >  1:1366246/1‑91 (MQ=255)

                                                                      ttaatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaag                     <  2:326310/91‑1 (MQ=255)

                                                                       taatAGAAATCAGCTTTTTTTTTTTTTTTAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaaga                    >  2:2337352/1‑91 (MQ=255)

                                                                       taatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaaga                    >  2:3093117/1‑91 (MQ=255)

                                                                       taatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTACCTACGCATAAATACTTATTACTGATATAACgaaaga                    >  2:3116627/1‑91 (MQ=255)

                                                                        aatAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaagaa                   >  1:3544223/1‑91 (MQ=255)

                                                                        aatAGAAATCAGCGTTTTTCATTGCCTAAAAACTTAATGTCCCTACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaagaa                   <  1:3962553/91‑1 (MQ=255)

                                                                         atAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACgaaagaaa                  >  1:604139/1‑91 (MQ=255)

                                                                          tAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAAc                 <  2:1014892/91‑1 (MQ=255)

                                                                           aGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACa                >  1:1631875/1‑91 (MQ=255)

                                                                            gAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACaa               <  1:3520857/91‑1 (MQ=255)

                                                                            gAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACaa               <  2:1259092/91‑1 (MQ=255)

                                                                            gAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACaa               <  2:3923600/91‑1 (MQ=255)

                                                                             aaaTCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACaaa              >  2:2651309/1‑91 (MQ=255)

                                                                             aaaTCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATAGAACGAAAGAAACaaa              <  2:741668/91‑1 (MQ=255)

                                                                               aTCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAACAAACAAAat            >  1:3788468/1‑91 (MQ=255)

                                                                                 cAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAatta          >  1:745013/1‑91 (MQ=255)

                                                                                  aGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAattat         >  1:1373996/1‑91 (MQ=255)

                                                                                  aGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAattat         >  1:2072291/1‑91 (MQ=255)

                                                                                   gCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAattatt        >  2:1028078/1‑91 (MQ=255)

                                                                                      tttttCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGc     <  2:3707973/91‑1 (MQ=255)

                                                                                      tttttCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGc     >  1:1112019/1‑91 (MQ=255)

                                                                                      tttttCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATATACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGc     >  2:3245352/1‑91 (MQ=255)

                                                                                       ttttCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTAATATAACGAAAGAAACAAAATTATTTGCt    <  1:1080887/91‑1 (MQ=255)

                                                                                        tttCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCta   >  1:798456/1‑91 (MQ=255)

                                                                                         ttCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCtat  <  1:3017706/91‑1 (MQ=255)

CTAATTGAATCTTTATTTATTCAGTTTCATAATAAAATGCATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTCATTGCCTAAAAACTTAATGTCCCGACCTCTTTATCTACGCATAAATACTTATTACTGATATAACGAAAGAAACAAAATTATTTGCTAT  >  USA300TCH1516_ALE/2432174‑2432353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.