| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 365040 | 123 (0.600) | 23 (0.130) | 10/136 | NT | 16.0% | intergenic (+50/+55) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
| ? | USA300TCH1516_ALE | = 365070 | 138 (0.800) | intergenic (+80/+25) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
Only 100 of 255 total aligned reads displayed.
CTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGA > USA300TCH1516_ALE/364950‑365130 | gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc > 2:2710276‑M1/80‑91 (MQ=255)cTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC < 1:2589452‑M1/91‑1 (MQ=255)cTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC < 2:3862674‑M1/91‑1 (MQ=255) cAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCaa > 1:434091/1‑91 (MQ=255) aTCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGt > 1:3665900/1‑91 (MQ=255) aTTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTgg < 2:2486581/91‑1 (MQ=255) aTTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTgg > 1:2288224/1‑91 (MQ=255) tttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgc > 1:2390736/1‑91 (MQ=255) ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg < 2:2452821/91‑1 (MQ=255) tCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcgc > 2:1714128/1‑91 (MQ=255) tCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcgc < 2:241374/91‑1 (MQ=255) cAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCa < 2:1425986/91‑1 (MQ=255) aGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCaa < 1:908993/91‑1 (MQ=255) gATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgc < 1:1813991‑M1/91‑16 (MQ=255) gATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACa > 1:3539624/1‑91 (MQ=255) atcaatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAg < 1:1536558/91‑1 (MQ=255) tcaatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgc > 2:3873580/1‑91 (MQ=255) atcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGca < 2:3419352/91‑1 (MQ=255) tcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcat < 1:1371246/91‑1 (MQ=255) tcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcat > 2:1871679/1‑91 (MQ=255) aTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgc < 1:2024670‑M1/91‑24 (MQ=255) ttGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcatcat > 1:1958838/1‑91 (MQ=255) aaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAACCCCCGTCACCAAGTTGGCGCAACAGCGCATCATa > 1:3075112‑M1/55‑91 (MQ=255) aaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATa > 1:400940‑M1/55‑91 (MQ=255) gCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaac < 2:2004673‑M1/91‑28 (MQ=255) gCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAGGTTGGCGCAACAGCGCATCATAAc < 2:826373/91‑1 (MQ=255) accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc > 1:2115897‑M1/53‑91 (MQ=255) accatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc > 1:891459‑M1/53‑91 (MQ=255) ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt > 1:110094‑M1/52‑91 (MQ=255) ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt > 2:1531650‑M1/52‑91 (MQ=255) cTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaact < 2:2501368‑M1/91‑29 (MQ=255) ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaactt < 1:2560179‑M1/91‑30 (MQ=255) ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaactt < 2:3533992‑M1/91‑30 (MQ=255) gtaGTATTGTAAATGAATCGAAGTACCTAAATTAAAGTCATGGCAAAGCTAAACCCCGTCACtaagtgatgatgcgctgttgcgccaactt < 2:3917942‑M1/90‑30 (MQ=255) catcaacatacattgcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt > 2:723357‑M1/51‑91 (MQ=255) tAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttg < 1:2255272‑M1/91‑31 (MQ=255) tAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttg < 1:642266‑M1/91‑31 (MQ=255) aGTATTGTAAAAGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg > 1:718569‑M2/1‑90 (MQ=255) gTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgt < 1:1706543‑M2/91‑3 (MQ=255) gTATTGTAAATGAATAGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgt < 2:993961‑M2/91‑3 (MQ=255) aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtga < 1:2883438‑M1/91‑35 (MQ=255) ttGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgac < 1:1135441‑M1/91‑36 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacgg < 1:476335‑M1/91‑38 (MQ=255) aaaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgggg > 2:3225668‑M2/1‑82 (MQ=255) aaaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgggg > 2:3225696‑M2/1‑82 (MQ=255) tGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtaacggggttt < 1:3795173‑M2/91‑13 (MQ=255) gAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtttt < 2:2937524/91‑1 (MQ=255) aaTCGAAGTACCTATATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa > 2:3560957/1‑91 (MQ=255) aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa > 1:1703791/1‑91 (MQ=255) tCGAAGTACCTAAATTGAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc < 2:3782707/91‑1 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa < 1:298155/91‑1 (MQ=255) aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa > 1:740728/1‑91 (MQ=255) tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa > 1:1228344/1‑91 (MQ=255) aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa < 2:3136230/91‑1 (MQ=255) aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa < 2:2263540/91‑1 (MQ=255) aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa < 1:291058/91‑1 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc < 1:344543/91‑1 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc > 2:3215162/1‑91 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc < 1:85062/91‑1 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc > 1:3025157/1‑91 (MQ=255) cTAAATTAAATTCATAGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc > 1:3376669/1‑91 (MQ=255) gaaattaaatgCATGGCAAAGCTAAACCCCGTCACCAAGTTGTCGCAACAGCGCATCATAACTTAGTGACTGGGTTTTATCATAGCAATCt < 2:484800/90‑1 (MQ=255) aaattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa > 2:613560/1‑91 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt < 1:2506803/91‑1 (MQ=255) attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc > 1:2486144/1‑91 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTctt > 2:123715/1‑89 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt < 2:1505040/91‑1 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt > 1:3318879/1‑91 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt > 2:2320042/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 2:1906655/91‑1 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 2:2180978/91‑1 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTCGc > 2:1668112/1‑91 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc > 1:2447729/1‑91 (MQ=255) aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt < 1:3453216/91‑1 (MQ=255) aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt < 2:1181839/91‑1 (MQ=255) aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt < 1:2701277/91‑1 (MQ=255) tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa < 2:2792725/91‑1 (MQ=255) aaaCCCCGTGACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattca < 1:3794363‑M1/91‑80 (MQ=255) aaaCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattca < 2:2135322‑M1/91‑80 (MQ=255) aaaCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattca < 2:3710979‑M1/91‑80 (MQ=255) aaaCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattca < 2:3710811‑M1/91‑80 (MQ=255) AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa > 1:2796270‑M1/1‑91 (MQ=255) AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa < 2:255287‑M1/91‑1 (MQ=255) ccccGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcattt > 1:2051288‑M1/1‑9 (MQ=255) ccccGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcattt > 1:2050774‑M1/1‑9 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCAACATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTGTTGAAatg < 2:3440884‑M1/91‑1 (MQ=255) CCCGTCACCAAGTTGGCGCAACAGCGCATGATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgt > 1:3167177‑M1/1‑91 (MQ=255) cGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttggattcatttaca < 1:3050265‑M1/91‑86 (MQ=255) cGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttaca > 1:3015368‑M1/1‑6 (MQ=255) cGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttaca > 1:1791415‑M1/1‑6 (MQ=255) cGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaacttaatttaggtacttcgattcatttaca < 2:3041883‑M2/91‑56 (MQ=255) gTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgcaattaatttaggtacttcgattcatttacaa > 1:3165613‑M1/1‑5 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg < 1:632409‑M1/91‑1 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg > 2:2946091‑M1/1‑91 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg > 1:1612333‑M1/1‑91 (MQ=255) tCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaat > 1:1853382‑M1/1‑4 (MQ=255) cACtaagttatgatgcgctgttgcgccaacttgctgacggggtttagctttgccatgaatttaatttaggtacttcgattcattcacaata > 2:556211‑M1/1‑3 (MQ=255) CACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt < 1:2141938‑M1/91‑1 (MQ=255) ctaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatact < 2:2441157‑M1/91‑91 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa < 1:2491796‑M1/91‑1 (MQ=255) | CTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGA > USA300TCH1516_ALE/364950‑365130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |