| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 365040 | 123 (0.600) | 23 (0.130) | 10/136 | NT | 16.0% | intergenic (+50/+55) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
| ? | USA300TCH1516_ALE | = 365070 | 138 (0.800) | intergenic (+80/+25) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
Only 100 of 232 total aligned reads displayed.
AGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAA > USA300TCH1516_ALE/364981‑365157 | aGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg < 2:2441157‑M2/91‑2 (MQ=255)aGTATTGTAAAAGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg > 1:718569‑M2/1‑90 (MQ=255) gTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgt < 1:1706543‑M2/91‑3 (MQ=255) aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtga > 1:1853382‑M2/1‑87 (MQ=255) ttGTAAATGAATCGAAGTACCTAAATTAATTGCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgac > 1:3165613‑M2/1‑86 (MQ=255) tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg > 1:1791415‑M2/1‑85 (MQ=255) tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg > 1:3015368‑M2/1‑85 (MQ=255) tGTAAATGAATCCAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg < 1:3050265‑M2/91‑7 (MQ=255) aaaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgggg > 1:2050774‑M2/1‑82 (MQ=255) tGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggttt < 2:2135322‑M2/91‑13 (MQ=255) tGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtaacggggttt < 1:3795173‑M2/91‑13 (MQ=255) gAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtttt < 2:2937524/91‑1 (MQ=255) aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt > 1:1680085/1‑91 (MQ=255) tCGAAGTACCTAAATTGAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc < 2:3782707/91‑1 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa < 1:298155/91‑1 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAATGACGGGGTTTTATCa > 2:3775024/1‑91 (MQ=255) aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa > 1:2539160/1‑91 (MQ=255) tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa > 1:1228344/1‑91 (MQ=255) aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa < 2:3136230/91‑1 (MQ=255) aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa < 1:291180/91‑1 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc > 1:1823592/1‑91 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc > 2:3215162/1‑91 (MQ=255) cTAAATTAAATTCATAGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc > 1:3376669/1‑91 (MQ=255) taaattaaatTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCt < 2:2736098/91‑1 (MQ=255) aaattaaattCATGGCAAAGCTAAACCCCGTCGCCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa < 1:473414/91‑1 (MQ=255) aaattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa < 1:3268953/91‑1 (MQ=255) aaattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa > 2:613560/1‑91 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc > 1:2052485/1‑91 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt < 1:2506803/91‑1 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt > 2:1177990/1‑91 (MQ=255) attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc > 1:1115225/1‑91 (MQ=255) attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc > 1:2486144/1‑91 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTctt > 2:123715/1‑89 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt < 2:2041921/91‑1 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt < 2:1505040/91‑1 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACACTCTACTTTTTCGTAg > 2:3345684/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 2:1906655/91‑1 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTCGc > 2:1668112/1‑91 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc < 2:680336/91‑1 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc > 1:2447729/1‑91 (MQ=255) tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc > 1:2565975/1‑91 (MQ=255) tgatgataAAACCCCGTCGCCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg > 2:3626427‑M1/9‑91 (MQ=255) aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt < 2:3539774/91‑1 (MQ=255) aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt > 1:3508346/1‑91 (MQ=255) aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt < 1:2701277/91‑1 (MQ=255) gCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttttt < 1:826915/91‑1 (MQ=255) AAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaa < 1:3378557‑M1/91‑1 (MQ=255) AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa > 1:2796270‑M1/1‑91 (MQ=255) AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa < 2:2213054‑M1/91‑1 (MQ=255) gTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaa < 1:1135441‑M2/91‑57 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg > 2:1516579‑M1/1‑91 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg > 1:1612333‑M1/1‑91 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg > 2:2946091‑M1/1‑91 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg < 1:632409‑M1/91‑1 (MQ=255) tCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaat < 1:2883438‑M2/91‑58 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa < 1:2491796‑M1/91‑1 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa > 2:350347‑M1/1‑91 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa > 2:1383256‑M1/1‑91 (MQ=255) cAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatacta < 2:2316883‑M2/91‑62 (MQ=255) cAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatacta < 1:642266‑M2/91‑62 (MQ=255) aaGTTGGCGCAACAGCGCATCATCACTTAgtgacggggtttagctttgccatgactttaatttaggtacttcgattcatttacaatactac < 2:3917942‑M2/91‑63 (MQ=255) aaGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaa < 1:866555‑M2/91‑63 (MQ=255) aaGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaa < 2:3850679‑M2/91‑63 (MQ=255) aaGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATg > 1:1424651/1‑91 (MQ=255) aGTTGGCGCAACAGCGCATCATAGCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg < 2:3422443/91‑1 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaag < 2:2501368‑M2/91‑64 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaag < 1:1732329‑M2/91‑64 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAGCAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg < 2:2857125/91‑1 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg > 1:1359390/1‑91 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg < 2:2971429/91‑1 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg < 1:3207926/91‑1 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg > 2:2473957/1‑91 (MQ=255) gTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaagc < 1:3077987‑M2/91‑65 (MQ=255) gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt < 1:1121539/91‑1 (MQ=255) gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt > 1:1570977/1‑91 (MQ=255) gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt < 2:116464/91‑1 (MQ=255) gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt < 2:10037/91‑1 (MQ=255) ttGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt < 1:3921963/91‑1 (MQ=255) ttGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt < 1:3325170/91‑1 (MQ=255) ttGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt < 1:2129913/91‑1 (MQ=255) ggCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTa > 1:2255586/1‑91 (MQ=255) ggCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTa > 1:2254817/1‑91 (MQ=255) gcgcAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaagccaat < 1:2024670‑M2/91‑69 (MQ=255) cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATc > 2:2618627/1‑91 (MQ=255) cgcAACAGCGAATTATAATATAGTGTTGGCGTTTTATCATAACAATCCACATTTCCGTAGCCGATTTCGAAATGTGTGTTGATGGATGATc > 2:3209978/1‑91 (MQ=255) cAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtt < 2:2568187/91‑1 (MQ=255) cAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtt < 2:447914/91‑1 (MQ=255) gcgcATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaagccaatgattgatc < 1:1827889‑M2/91‑77 (MQ=255) gcgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCa > 2:1330445/1‑91 (MQ=255) gcgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCa < 1:130567/91‑1 (MQ=255) cgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaa > 1:534371/1‑91 (MQ=255) gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa < 1:3199305/91‑1 (MQ=255) gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa < 1:2365160/91‑1 (MQ=255) catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa < 2:2311984/91‑1 (MQ=255) catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa > 2:1274672/1‑91 (MQ=255) atcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaaa < 1:3701422/91‑1 (MQ=255) tcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAAt > 2:525195/1‑91 (MQ=255) atAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTg < 2:3408868/91‑1 (MQ=255) aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTTGTATCCTTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa > 2:922214/1‑91 (MQ=255) aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa < 1:4299/91‑1 (MQ=255) | AGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAA > USA300TCH1516_ALE/364981‑365157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |