BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 425019	196 (0.960)	13 (0.070)	10/146	NT	6.8%	intergenic (+34/‑392)	USA300HOU_RS01985/gpmA_1	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
*	?	USA300TCH1516_ALE	= 425031	176 (0.950)	13 (0.070)	10/146	NT	6.8%	intergenic (+46/‑380)	USA300HOU_RS01985/gpmA_1	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase

Only 100 of 274 total aligned reads displayed.

GGTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTA  >  USA300TCH1516_ALE/424929‑425109

 gTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATgg                                                                                           >  2:769331/1‑91 (MQ=255)

 gTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATgg                                                                                           <  2:3537646/91‑1 (MQ=255)

  ttaaaTTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGc                                                                                          <  2:3739892/88‑1 (MQ=255)

  ttCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGc                                                                                          >  1:3885383/1‑91 (MQ=255)

      aTTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTc                                                                                      >  1:1814688/1‑91 (MQ=255)

       ttATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCa                                                                                     >  1:1215350/1‑91 (MQ=255)

        tATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAg                                                                                    <  2:2349843/91‑1 (MQ=255)

         aTCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaa                                                                                   <  1:1065728‑M1/91‑10 (MQ=255)

         aTCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGt                                                                                   >  2:3139191/1‑91 (MQ=255)

         aTCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGt                                                                                   <  1:553164/91‑1 (MQ=255)

          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  2:997681/1‑91 (MQ=255)

          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  <  2:561088/91‑1 (MQ=255)

          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  2:1600238/1‑91 (MQ=255)

          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  1:60178/1‑91 (MQ=255)

          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  1:534185/1‑91 (MQ=255)

          tCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  1:3554475/1‑91 (MQ=255)

          tCTTAATTGCAATCGTAACGTCAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGtt                                                                                  >  2:197028/1‑91 (MQ=255)

            ttAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGt                                                                                <  1:2740260/91‑1 (MQ=255)

             tAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgcc                                                                               <  1:2702224‑M1/91‑14 (MQ=255)

             tAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTc                                                                               >  1:939598‑M2/1‑90 (MQ=255)

               aTTGCGATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccat                                                                             <  2:3210635‑M1/91‑16 (MQ=255)

               aTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcat                                                                             >  1:3078374‑M2/1‑88 (MQ=255)

               aTTGCAATCGTAACGTTAATTTTAAGAGATATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcat                                                                             >  2:226539‑M2/1‑88 (MQ=255)

                 tGCAATCGTAAGGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatct                                                                           <  2:1647795‑M1/91‑18 (MQ=255)

                 tGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatct                                                                           <  1:3145308‑M1/91‑18 (MQ=255)

                 tGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatct                                                                           >  2:599221‑M2/1‑86 (MQ=255)

                  gCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatctt                                                                          <  2:2165344‑M1/91‑19 (MQ=255)

                   gaatCGTAACGTTAATTTTAAGAGGTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatcttt                                                                         >  2:1681171‑M2/2‑84 (MQ=255)

                    aaTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCtttt                                                                        <  2:3329599/91‑1 (MQ=255)

                     aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCttttt                                                                       >  1:133563/1‑91 (MQ=255)

                     aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCttttt                                                                       <  1:729123/91‑1 (MQ=255)

                      gcgTAAAGTTAAGTTTAAGAGATATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatctttatt                                                                      <  2:1158729‑M1/90‑23 (MQ=255)

                         tAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGacaactgaatgccatctttatttca                                                                   <  2:1626727‑M1/91‑26 (MQ=255)

                         tAACGTTAATTTTAAGAGCTATGAGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTAtt                                                                   <  2:3480129/91‑1 (MQ=255)

                            cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                >  1:2771681/1‑91 (MQ=255)

                            cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                >  2:139296/1‑91 (MQ=255)

                            cGTTAATTTTAAGAGCTATGCGGAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                <  2:3178948/91‑1 (MQ=255)

                             gTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCg                                                               >  1:309492/1‑91 (MQ=255)

                             gTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCg                                                               >  2:1826321/1‑91 (MQ=255)

                             gTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCg                                                               <  1:1755753/91‑1 (MQ=255)

                             gTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCg                                                               >  2:3269745/1‑91 (MQ=255)

                               tAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTg                                                             <  1:2407030/91‑1 (MQ=255)

                                  ttttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaa                                                          <  1:1862389/91‑1 (MQ=255)

                                    ttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAAt                                                        <  1:3003872/91‑1 (MQ=255)

                                    ttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAAt                                                        <  2:1280748/91‑1 (MQ=255)

                                      aaGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATgg                                                      >  1:165837/1‑91 (MQ=255)

                                      aaGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATgg                                                      >  2:477185/1‑91 (MQ=255)

                                       agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                     >  1:3495869/1‑91 (MQ=255)

                                       agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                     >  1:1162632/1‑91 (MQ=255)

                                       agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                     <  2:1085256/91‑1 (MQ=255)

                                       agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                     >  2:1909436/1‑91 (MQ=255)

                                          gCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCaa                                                  <  1:3050879/91‑1 (MQ=255)

                                           cTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAat                                                 >  2:2523239/1‑91 (MQ=255)

                                               gCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGt                                             >  1:3865508/1‑91 (MQ=255)

                                                cGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGta                                            >  1:1385658/1‑91 (MQ=255)

                                                cGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGta                                            <  2:887/91‑1 (MQ=255)

                                                  tAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtatt                                          <  1:3809825/91‑1 (MQ=255)

                                                     ataataAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATtata                                       >  2:1507465/1‑91 (MQ=255)

                                                     ataataAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATAGTCAATATGTATtata                                       >  2:3032731/1‑91 (MQ=255)

                                                       aataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataat                                     >  1:2640360/1‑91 (MQ=255)

                                                       aataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataat                                     >  2:2789695/1‑91 (MQ=255)

                                                        ataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGGGAAAATGGTCAATATGTATTataata                                    <  2:2239699/91‑1 (MQ=255)

                                                         taaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAatat                                   <  2:1180493/91‑1 (MQ=255)

                                                          aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                  >  1:3463023/1‑91 (MQ=255)

                                                          aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                  <  1:3852725/91‑1 (MQ=255)

                                                          aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                  <  2:2537209/91‑1 (MQ=255)

                                                            aaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTg                                >  2:1250186/1‑91 (MQ=255)

                                                             aaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGa                               >  2:1326250/1‑91 (MQ=255)

                                                             aaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGa                               >  2:1327137/1‑91 (MQ=255)

                                                               aaTTCAATTGGAAATTGAAATAAAGATGGCAGTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaa                             <  2:3553840/91‑1 (MQ=255)

                                                                aTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaaa                            <  1:3168141/91‑1 (MQ=255)

                                                                  tCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATg                          >  1:3523930/1‑91 (MQ=255)

                                                                   cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                         >  1:372441/1‑91 (MQ=255)

                                                                   cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                         >  2:1457152/1‑91 (MQ=255)

                                                                   cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                         <  2:2044393/91‑1 (MQ=255)

                                                                    aaTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGACAATGTa                        >  2:2647990/1‑91 (MQ=255)

                                                                    aaTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTa                        >  2:2991507/1‑91 (MQ=255)

                                                                      ttGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTaga                      <  1:3467959/91‑1 (MQ=255)

                                                                       tGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagat                     >  1:974267/1‑91 (MQ=255)

                                                                       tGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagat                     <  1:3663790/91‑1 (MQ=255)

                                                                        ggAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagata                    <  1:1009886/91‑1 (MQ=255)

                                                                             tcgAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataagata               >  2:1134240/3‑91 (MQ=255)

                                                                              tGAAATATAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAg              <  2:3509913/91‑1 (MQ=255)

                                                                                aaaTAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacg            <  2:300990‑M2/91‑69 (MQ=255)

                                                                                 aaTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAt           >  1:224088/1‑91 (MQ=255)

                                                                                 aaTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAt           >  1:2865474/1‑91 (MQ=255)

                                                                                  aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt          >  2:38145/1‑91 (MQ=255)

                                                                                   tAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTa         >  1:157939/1‑91 (MQ=255)

                                                                                    aaaGATGacaactgaatgccatctttatttcaatttccaattgaatttttttttttttttctcatagctcttaaaattaacgttacgattg        >  2:917009‑M1/1‑7 (MQ=255)

                                                                                    aaaGATGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattt        >  2:407695‑M1/1‑7 (MQ=255)

                                                                                       gATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagttcttaaaattaacgttacgattgcaa     <  2:1424020‑M2/91‑76 (MQ=255)

                                                                                       gATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATAATAATATTTGAAAATGTAGATAAGATAGGATTaaaaa     <  2:3415065/91‑1 (MQ=255)

                                                                                        aTGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaat    <  2:513372‑M1/91‑89 (MQ=255)

                                                                                        aTGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaat    <  2:74001‑M1/91‑89 (MQ=255)

                                                                                        aTGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaat    <  2:274144‑M1/91‑89 (MQ=255)

                                                                                         tGacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatt   >  2:3323688‑M1/1‑2 (MQ=255)

                                                                                         tGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGt   >  2:104476/1‑91 (MQ=255)

                                                                                          ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATACTATTTGAAAATGTAGATAAGATAGGATTAAAAAGtc  >  2:3921298/1‑90 (MQ=255)

                                                                                          ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta  >  1:254735/1‑91 (MQ=255)

                                                                                          gacaactgaatgccatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgcaatta  >  1:3278501‑M1/1‑1 (MQ=255)

GGTTCAATTATCTTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTA  >  USA300TCH1516_ALE/424929‑425109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.