BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 425019	196 (0.960)	13 (0.070)	10/146	NT	6.8%	intergenic (+34/‑392)	USA300HOU_RS01985/gpmA_1	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
*	?	USA300TCH1516_ALE	= 425031	176 (0.950)	13 (0.070)	10/146	NT	6.8%	intergenic (+46/‑380)	USA300HOU_RS01985/gpmA_1	hypothetical protein/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase

Only 100 of 233 total aligned reads displayed.

TTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAATAT  >  USA300TCH1516_ALE/424941‑425121

ttAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGt                                                                                            <  1:2740260/91‑1 (MQ=255)

ttAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGt                                                                                            <  2:3621709/91‑1 (MQ=255)

 tAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTc                                                                                           <  2:892858‑M2/91‑2 (MQ=255)

 tAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTc                                                                                           >  1:3278501‑M2/1‑90 (MQ=255)

   aTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcat                                                                                         <  2:274144‑M2/91‑4 (MQ=255)

   aTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcat                                                                                         <  2:74001‑M2/91‑4 (MQ=255)

   aTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcat                                                                                         <  1:3471105‑M2/91‑4 (MQ=255)

   aTTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcat                                                                                         >  1:3078374‑M2/1‑88 (MQ=255)

       gaatCGTAACGTTAATTTTAAGAGGTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTcatcttt                                                                                     >  2:1681171‑M2/2‑84 (MQ=255)

        aaTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCtttt                                                                                    <  2:3329599/91‑1 (MQ=255)

         aTCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCttttt                                                                                   <  2:1812209/91‑1 (MQ=255)

             tAACGTTAATTTTAAGAGCTATGAGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTAtt                                                                               <  2:3480129/91‑1 (MQ=255)

                cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                            <  2:1130579/91‑1 (MQ=255)

                cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                            >  1:2771681/1‑91 (MQ=255)

                cGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGc                                                                            >  2:139296/1‑91 (MQ=255)

                 gTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCg                                                                           <  1:1755753/91‑1 (MQ=255)

                      ttttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaa                                                                      <  1:1862232/91‑1 (MQ=255)

                       tttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaaa                                                                     <  1:2840565/91‑1 (MQ=255)

                       tttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaaa                                                                     >  1:9408/1‑91 (MQ=255)

                       tttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGaaaa                                                                     <  2:2916404/91‑1 (MQ=255)

                        ttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAAt                                                                    <  1:3003872/91‑1 (MQ=255)

                        ttAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAAt                                                                    <  1:552958/91‑1 (MQ=255)

                          aaGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATgg                                                                  >  1:165837/1‑91 (MQ=255)

                           agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                                 >  2:1909436/1‑91 (MQ=255)

                           agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                                 >  1:71922/1‑91 (MQ=255)

                           agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                                 >  1:1162632/1‑91 (MQ=255)

                           agagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGt                                                                 <  2:1085256/91‑1 (MQ=255)

                            gagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTc                                                                >  1:2033974/1‑91 (MQ=255)

                            gagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTc                                                                <  1:2567481/91‑1 (MQ=255)

                            gagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTc                                                                <  1:3828946/91‑1 (MQ=255)

                            gagCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTc                                                                <  1:1241188/91‑1 (MQ=255)

                              gCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCaa                                                              <  1:3050879/91‑1 (MQ=255)

                               cTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAat                                                             >  2:2523239/1‑91 (MQ=255)

                                    cGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGta                                                        >  1:1386481/1‑91 (MQ=255)

                                     gTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtat                                                       <  1:3522845/91‑1 (MQ=255)

                                      tAAATAATAAAAAAATTCAATTGGACATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtatt                                                      <  1:3682886/91‑1 (MQ=255)

                                      tAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtatt                                                      <  1:3809825/91‑1 (MQ=255)

                                      tAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGtatt                                                      <  1:789140/91‑1 (MQ=255)

                                       aaaTAATAAAAAAATTCAATTGTAAAGTGAAATAAAGATTGCATTCAGTTGTCATCGTTTTTATTTGCGTGAAAATGTTCAATATGtatga                                                     <  2:602772/91‑3 (MQ=255)

                                         ataataAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATtata                                                   >  2:1507465/1‑91 (MQ=255)

                                         ataataAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATAGTCAATATGTATtata                                                   >  2:3032731/1‑91 (MQ=255)

                                          taataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataa                                                  >  1:2448129/1‑91 (MQ=255)

                                           aataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataat                                                 >  2:2789695/1‑91 (MQ=255)

                                           aataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataat                                                 >  2:312075/1‑91 (MQ=255)

                                           aataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTataat                                                 >  1:2640417/1‑91 (MQ=255)

                                            ataaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGGGAAAATGGTCAATATGTATTataata                                                <  2:2239699/91‑1 (MQ=255)

                                             taaAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAatat                                               <  2:1180493/91‑1 (MQ=255)

                                              aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                              <  2:2537209/91‑1 (MQ=255)

                                              aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                              >  2:942282/1‑91 (MQ=255)

                                              aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                              <  1:3856599/91‑1 (MQ=255)

                                              aaaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAtt                                              <  1:270076/91‑1 (MQ=255)

                                               aaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGGGTGAAAATGGTCAATATGTATTATAATGttt                                             <  2:598709/91‑1 (MQ=255)

                                               aaaaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATAttt                                             >  2:1566809/1‑91 (MQ=255)

                                                 aaaaTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGa                                           >  2:1326250/1‑91 (MQ=255)

                                                   aaTTCAATTGGAAATTGAAATAAAGATGGCAGTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaa                                         <  2:3553840/91‑1 (MQ=255)

                                                    aTTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGaaaa                                        <  1:3168141/91‑1 (MQ=255)

                                                     ttCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAAt                                       >  2:2040964/1‑91 (MQ=255)

                                                      tCAATTGGAAATTGAAATAAAGATGGTATTCAGTTGTCATCTTTTTTATTTTCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATg                                      >  2:3279814/1‑91 (MQ=255)

                                                      tCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATg                                      >  1:3523930/1‑91 (MQ=255)

                                                       cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                                     <  1:489343/91‑1 (MQ=255)

                                                       cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                                     >  1:372441/1‑91 (MQ=255)

                                                       cAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGt                                     <  2:2044393/91‑1 (MQ=255)

                                                        aaTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGACAATGTa                                    >  2:2647990/1‑91 (MQ=255)

                                                        aaTTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTa                                    <  1:1078312/91‑1 (MQ=255)

                                                          ttGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTaga                                  <  1:1372288/91‑1 (MQ=255)

                                                           tGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagat                                 <  2:498844/91‑1 (MQ=255)

                                                           tGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagat                                 <  1:3653951/91‑1 (MQ=255)

                                                            ggAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagata                                <  1:1009886/91‑1 (MQ=255)

                                                            ggAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagata                                <  2:1211692/91‑1 (MQ=255)

                                                              aaaTTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTagataag                              >  2:400582/1‑91 (MQ=255)

                                                                  tGAAATAGAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAg                          <  2:3509522/91‑1 (MQ=255)

                                                                  tGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAg                          <  2:1274312/91‑1 (MQ=255)

                                                                   gAAATGAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAgg                         <  2:3200511/91‑1 (MQ=255)

                                                                   gAAATAAAGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttac                         <  1:3127799‑M2/91‑68 (MQ=255)

                                                                    aaaTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGa                        <  2:3010977/91‑1 (MQ=255)

                                                                     aaTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAt                       >  1:225761/1‑91 (MQ=255)

                                                                      aTAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGAtt                      >  2:37847/1‑91 (MQ=255)

                                                                        aaaGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTaa                    <  2:469085/91‑1 (MQ=255)

                                                                         aaGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgattgc                   <  2:2165344‑M2/91‑74 (MQ=255)

                                                                          aGATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaaccttacgattgca                  <  2:1647795‑M2/91‑75 (MQ=255)

                                                                          aGATGGCATTCAGTTGTCATCTTTTTTATTTACGTGAAAATGGTCAAAATGTATTATAATATTTTAAAATGTAGATAAGAAAGGATTgaaa                  >  2:1154419/1‑91 (MQ=255)

                                                                           gATGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagttcttaaaattaacgttacgattgcaa                 <  2:1424020‑M2/91‑76 (MQ=255)

                                                                           gATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATAATAATATTTGAAAATGTAGATAAGATAGGATTaaaaa                 <  2:3415065/91‑1 (MQ=255)

                                                                            aTGGCATTCAGTTGTcatctttatttcaatttccaattgaatttttttattatttacgcatagctcttaaaattaacgttacgatcgcaat                <  2:3210635‑M2/91‑77 (MQ=255)

                                                                             tGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGt               >  2:1281894/1‑91 (MQ=255)

                                                                             tGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGt               >  2:104476/1‑91 (MQ=255)

                                                                             tGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGt               <  2:1471000/91‑1 (MQ=255)

                                                                              ggCATTCAGTTGTCATCTTTTTTTTTTGTTTTAAAATGGTCAATATGTATTATAATATTTGATAATGTAGATAAGATAGGATTAAACAGta              >  2:2266609/1‑91 (MQ=255)

                                                                              ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATACTATTTGAAAATGTAGATAAGATAGGATTAAAAAGtc              >  2:3921298/1‑90 (MQ=255)

                                                                              ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta              <  2:1369129/91‑1 (MQ=255)

                                                                              ggCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGta              >  1:254735/1‑91 (MQ=255)

                                                                                cATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGtaat            >  1:1617074/1‑91 (MQ=255)

                                                                                cATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGtaat            >  2:2978492/1‑91 (MQ=255)

                                                                                    cAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGaaataaat        >  2:3514821/1‑91 (MQ=255)

                                                                                    cAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAAt        >  2:2577768/1‑91 (MQ=255)

                                                                                      gTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTa      >  2:3402842/1‑91 (MQ=255)

                                                                                         gTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAata   <  1:2959014/91‑1 (MQ=255)

                                                                                          tCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAatat  >  1:3910672/1‑91 (MQ=255)

                                                                                          tCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAatat  >  1:1477638/1‑91 (MQ=255)

                                                                                          tCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAatat  <  2:2334186/91‑1 (MQ=255)

TTAATTGCAATCGTAACGTTAATTTTAAGAGCTATGCGTAAATAATAAAAAAATTCAATTGGAAATTGAAATAAAGATGGCATTCAGTTGTCATCTTTTTTATTTGCGTGAAAATGGTCAATATGTATTATAATATTTGAAAATGTAGATAAGATAGGATTAAAAAGTAATAAATTAATAT  >  USA300TCH1516_ALE/424941‑425121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.