BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	842619 =	194 (0.950)	10 (0.050)	8/144	NT	5.4%	intergenic (+5/‑657)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	842662 =	175 (0.960)	10 (0.050)	8/144	NT	5.4%	intergenic (+48/‑614)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 288 total aligned reads displayed.

TATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAT  >  USA300TCH1516_ALE/842530‑842709

tatTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAA                                                                                           >  1:3352909‑M1/1‑91 (MQ=255)

 tttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaa                                                                                          <  2:952705‑M1/3‑1 (MQ=255)

 tttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaa                                                                                          <  2:952075‑M1/3‑1 (MQ=255)

 tttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaa                                                                                          <  2:1724635‑M1/3‑1 (MQ=255)

 tttatgtttaactactctagattgaccctatcttaacataattctttttacgcatcttttctttctactattcattactaaattaataaaa                                                                                          >  1:2823517‑M1/89‑91 (MQ=255)

 atTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAA                                                                                          <  2:1408051‑M1/91‑1 (MQ=255)

      tCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG                                                                                     <  1:116832‑M1/91‑1 (MQ=255)

       cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATCAACAAAATACTGAAGATAAATAAGATTAAAAGAAGt                                                                                    >  2:3114991/1‑91 (MQ=255)

       cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGt                                                                                    <  1:1809480/91‑1 (MQ=255)

          aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGaa                                                                                 >  2:1207474/1‑91 (MQ=255)

           cAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAg                                                                                <  1:860835/91‑1 (MQ=255)

           cAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAg                                                                                >  2:1270036/1‑91 (MQ=255)

           cAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAg                                                                                >  2:2233488/1‑91 (MQ=255)

               gTCATCATATACAGGACAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAACTAAGATTACAAGAAGTGAAGGATg                                                                            >  2:1812740/1‑91 (MQ=255)

               gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATg                                                                            >  1:2170022/1‑91 (MQ=255)

                  atcatATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTta                                                                         >  1:1531217/1‑91 (MQ=255)

                     atatACAGGAAAGTATTTAAAAGAAGTGCTTGAACGAGAGAAACAAAATACTGAAGATAAGTAAGATTAAAAGAAGTGAAGGATGTTATaa                                                                      <  2:2749721/91‑1 (MQ=255)

                     atatACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaa                                                                      >  2:286260/1‑91 (MQ=255)

                     atatACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaa                                                                      >  1:2959993/1‑91 (MQ=255)

                     atatACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaa                                                                      >  1:2808318/1‑91 (MQ=255)

                     atatACAGGAAAGTATTTAAAAGAAGTACTTAAACGAGATAAACAAAATACTGAAGATAAATAGGATTAAAAGAAGTGAAGGATGTTATaa                                                                      <  2:2899202/91‑1 (MQ=255)

                      tataCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaaa                                                                     <  2:1321126/91‑1 (MQ=255)

                      gataCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaaa                                                                     <  2:2626668/90‑1 (MQ=255)

                       ataCAGGAGAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATACGATTAAAAGAAGTGAAGGATGTTATAAAt                                                                    <  2:3444004/91‑1 (MQ=255)

                        taCAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAAtt                                                                   <  1:989193/91‑1 (MQ=255)

                           cctatcttaacataattctttttacgcatcttttctttctactattaattaataaattaataAAAAGAAGCGAAGGATGTTATAAATTTAt                                                                >  2:58294‑M1/63‑91 (MQ=255)

                           aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTAt                                                                >  2:673707/1‑91 (MQ=255)

                            ggAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATc                                                               >  1:2565209/1‑91 (MQ=255)

                             gAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATcc                                                              >  1:3124285/1‑91 (MQ=255)

                               aaGTATTTAAAAGAAGTACTTGAACGAGAAAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCtt                                                            <  1:3180238/91‑1 (MQ=255)

                               aaGTATTGAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatcctt                                                            <  2:1177517‑M1/91‑26 (MQ=255)

                                aGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTc                                                           >  1:2586525/1‑91 (MQ=255)

                                aGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTc                                                           <  2:1083169/91‑1 (MQ=255)

                                 gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                          >  1:2332051/1‑91 (MQ=255)

                                 gTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAACATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCg                                                          >  2:3045444/1‑91 (MQ=255)

                                  tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcac                                                         <  2:2421117‑M1/91‑29 (MQ=255)

                                  tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                         <  2:206544‑M2/91‑2 (MQ=255)

                                  tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                         >  1:2296653‑M2/1‑90 (MQ=255)

                                  tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                         <  1:1608977‑M2/91‑2 (MQ=255)

                                  tATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                         >  2:737209‑M2/1‑90 (MQ=255)

                                   ataaaaaagaagTACTGGAACGAGAGAAAAAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacacccttcact                                                        <  2:3319066‑M1/87‑30 (MQ=255)

                                   aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAATATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGct                                                        >  2:3468167‑M2/1‑89 (MQ=255)

                                    tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcactt                                                       <  2:1976013‑M1/91‑31 (MQ=255)

                                    tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcactt                                                       <  2:3757149‑M1/91‑31 (MQ=255)

                                    tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                       <  2:3081820‑M2/91‑4 (MQ=255)

                                     ttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcacttc                                                      <  1:2202954‑M1/91‑32 (MQ=255)

                                     ttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGcgaaggataaatttataacatccttcacttc                                                      <  1:1990476‑M1/91‑32 (MQ=255)

                                     ttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                      <  2:911518‑M2/91‑5 (MQ=255)

                                       aaaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttctt                                                    >  1:557916‑M2/1‑85 (MQ=255)

                                       aaaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttctt                                                    <  1:1331570‑M2/91‑7 (MQ=255)

                                        aattctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttt                                                   >  1:3798159‑M1/50‑91 (MQ=255)

                                        aaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttcttt                                                   >  2:2307644‑M2/1‑84 (MQ=255)

                                         attctttttacgcatcttatctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCtttt                                                  >  2:457367‑M1/49‑91 (MQ=255)

                                          agaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                 <  1:818587/91‑1 (MQ=255)

                                             agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                              >  2:3937033/1‑91 (MQ=255)

                                             agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                              >  2:69642/1‑91 (MQ=255)

                                              gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                             >  1:3676763/1‑91 (MQ=255)

                                               tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                            <  1:1941162/91‑1 (MQ=255)

                                               tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                            >  1:3647581/1‑91 (MQ=255)

                                               tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                            <  1:3441306/91‑1 (MQ=255)

                                                 cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                          >  1:2962054/1‑91 (MQ=255)

                                                 cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                          >  2:2978965/1‑91 (MQ=255)

                                                  ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                         >  2:3529784/1‑91 (MQ=255)

                                                  ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                         <  2:186189/91‑1 (MQ=255)

                                                  ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAttt                                         <  1:2225652/91‑1 (MQ=255)

                                                   tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTa                                        >  1:3945095/1‑91 (MQ=255)

                                                    gAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAg                                       >  2:1372952/1‑91 (MQ=255)

                                                     aaCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGt                                      >  1:1987838/1‑91 (MQ=255)

                                                        gagaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAAt                                   <  2:1466778/91‑1 (MQ=255)

                                                         agaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                  <  1:620120/91‑1 (MQ=255)

                                                          gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGa                                 >  1:3697898/1‑91 (MQ=255)

                                                           aTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                <  1:1765174/91‑1 (MQ=255)

                                                             aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAta                              >  1:1880762/1‑91 (MQ=255)

                                                              aaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtag                             <  1:3000447/91‑1 (MQ=255)

                                                                cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                           >  1:1197703/1‑91 (MQ=255)

                                                                cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                           <  2:2479472/91‑1 (MQ=255)

                                                                 aaaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                          <  1:2134015/91‑1 (MQ=255)

                                                                   aaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaa                        >  2:3239659/1‑91 (MQ=255)

                                                                    aTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaa                       >  2:1292217/1‑91 (MQ=255)

                                                                      aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                     <  2:2526419/91‑1 (MQ=255)

                                                                       cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                    >  2:484091/1‑91 (MQ=255)

                                                                       cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTGTTATTAATTTAGTAATGAATAGTagaaagaa                    <  2:1593930/91‑1 (MQ=255)

                                                                       cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTGATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                    <  2:1535100/91‑1 (MQ=255)

                                                                         gAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                  >  2:2800386/1‑91 (MQ=255)

                                                                            gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt               >  2:1846746/1‑91 (MQ=255)

                                                                               aaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg            <  2:2150705/91‑1 (MQ=255)

                                                                               aaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg            >  2:1647165/1‑91 (MQ=255)

                                                                                aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt           >  2:3601863/1‑91 (MQ=255)

                                                                                aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt           <  2:35047/91‑1 (MQ=255)

                                                                                 ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTa          <  1:2682214/91‑1 (MQ=255)

                                                                                   aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa        <  1:1466733/91‑1 (MQ=255)

                                                                                    aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa       <  2:3398981/91‑1 (MQ=255)

                                                                                    aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa       <  1:753929/91‑1 (MQ=255)

                                                                                        tAAAAGAAGTGAAGGATGTTATAGATTTATCCTTCGCTTCTTTTTACTCATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa   >  2:3302709/1‑91 (MQ=255)

                                                                                        tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTCGTACTGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa   >  1:2907638/1‑91 (MQ=255)

                                                                                        tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa   <  2:3861711/91‑1 (MQ=255)

                                                                                        tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa   <  1:3486115/91‑1 (MQ=255)

                                                                                         AAAAGATGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt  >  2:473870‑M1/1‑91 (MQ=255)

                                                                                         AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt  >  2:3897533‑M1/1‑91 (MQ=255)

                                                                                         AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt  <  2:2590441‑M1/91‑1 (MQ=255)

TATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAT  >  USA300TCH1516_ALE/842530‑842709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.