BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	842619 =	194 (0.950)	10 (0.050)	8/144	NT	5.4%	intergenic (+5/‑657)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	842662 =	175 (0.960)	10 (0.050)	8/144	NT	5.4%	intergenic (+48/‑614)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase

Only 100 of 249 total aligned reads displayed.

AGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCG  >  USA300TCH1516_ALE/842572‑842752

agaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                                                            <  1:818587/91‑1 (MQ=255)

agaagTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttttt                                                                                            >  1:2516125/1‑91 (MQ=255)

 tctttttacgcatcttttctttctactattcattactaaattaataAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                           >  1:1397736‑M1/47‑91 (MQ=255)

  aagTACTTGAACGAGATAAACAAATTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCATTCGCTTCTTTttat                                                                                          >  2:3305033/1‑91 (MQ=255)

  aagTACTCGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttat                                                                                          <  1:1963891/91‑1 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAATGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  2:3447452/1‑91 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  2:3937033/1‑91 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  1:1988549/1‑91 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  2:69689/1‑91 (MQ=255)

   agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                         >  2:69642/1‑91 (MQ=255)

    gTACTTGAACGAGATAAACAAAATCCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATATATCCTTCGCTTCTTTttatta                                                                                        >  2:2440981/1‑91 (MQ=255)

    gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                                        >  2:1501653/1‑91 (MQ=255)

    gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                                        >  1:3676763/1‑91 (MQ=255)

     tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                                       <  1:1941162/91‑1 (MQ=255)

     tACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTaa                                                                                       <  1:3441306/91‑1 (MQ=255)

      aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAt                                                                                      >  1:1321162/1‑91 (MQ=255)

       cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                                     >  1:2962054/1‑91 (MQ=255)

       cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                                     >  1:2134762/1‑91 (MQ=255)

       cTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAAtt                                                                                     >  2:2978965/1‑91 (MQ=255)

          gAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAg                                                                                  >  2:1372952/1‑91 (MQ=255)

           aaCGAGAAAAACAAAATACTGAAGATAAATCAGATTAAAAGAAGTGAAGGGTGTTATAAATCTATCCTTCGCTTCTTTTTATTAATTTAGt                                                                                 <  1:1597870/91‑1 (MQ=255)

            aCGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                <  2:2903430/91‑1 (MQ=255)

              gagaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAAt                                                                              <  2:1466778/91‑1 (MQ=255)

               agaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                             <  1:620120/91‑1 (MQ=255)

                gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGa                                                                            >  1:3697898/1‑91 (MQ=255)

                 aTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                                                           >  1:395560/1‑91 (MQ=255)

                 aTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                                                           <  2:1291030/91‑1 (MQ=255)

                 aTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                                                           <  1:1765174/91‑1 (MQ=255)

                   aaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAta                                                                         >  1:1880762/1‑91 (MQ=255)

                      cagaaTACTGAAGATAAATAAGATTAAATGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                                      <  2:2479420/88‑1 (MQ=255)

                      cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                                      <  1:2866756/91‑1 (MQ=255)

                      cAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagta                                                                      <  2:2109323/91‑1 (MQ=255)

                        aaaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTaga                                                                    <  2:1246589/91‑1 (MQ=255)

                           tACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATCAATTTAGTAATGAATAGTagaaag                                                                 >  2:1311042/1‑91 (MQ=255)

                            aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                                <  2:2526419/91‑1 (MQ=255)

                            aCTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaaga                                                                <  2:3058419/91‑1 (MQ=255)

                             cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                               >  2:484091/1‑91 (MQ=255)

                             cTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTagaaagaa                                                               <  2:1596552/91‑1 (MQ=255)

                               gAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                                                             >  1:2574253/1‑91 (MQ=255)

                               gAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaa                                                             >  2:10321/1‑91 (MQ=255)

                                 aGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGaaagaaaaga                                                           >  1:376620/1‑91 (MQ=255)

                                  gATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGAt                                                          >  2:1846746/1‑91 (MQ=255)

                                    ctaaattaataaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGc                                                        >  1:3931082‑M2/55‑91 (MQ=255)

                                     aaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg                                                       <  2:2150705/91‑1 (MQ=255)

                                     aaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCg                                                       >  2:1647165/1‑91 (MQ=255)

                                      aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                      >  2:3601863/1‑91 (MQ=255)

                                      aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                      <  2:35162/91‑1 (MQ=255)

                                      aataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                      >  1:2202569/1‑91 (MQ=255)

                                       ataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTa                                                     <  1:2682214/91‑1 (MQ=255)

                                        taaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaa                                                    >  2:2583247/1‑91 (MQ=255)

                                         aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   <  1:1466733/91‑1 (MQ=255)

                                         aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                   >  1:3594951/1‑91 (MQ=255)

                                          aGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaa                                                  <  1:753929/91‑1 (MQ=255)

                                            ataaaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg                                                >  1:2689661‑M2/47‑91 (MQ=255)

                                              tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTCGTACTGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                              >  1:2907638/1‑91 (MQ=255)

                                              tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                              <  2:3861711/91‑1 (MQ=255)

                                              tAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                              <  1:3486115/91‑1 (MQ=255)

                                               aaaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGATAAGATGCGTAAAAAGAAt                                             >  2:457367‑M2/44‑91 (MQ=255)

                                               AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt                                             >  2:3897533‑M1/1‑91 (MQ=255)

                                               AAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAt                                             <  2:2496281‑M1/91‑1 (MQ=255)

                                                aaagaagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                            >  1:3798159‑M2/43‑91 (MQ=255)

                                                AAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAACGATGCGTAAAAAGAAtt                                            <  1:3382648‑M1/91‑1 (MQ=255)

                                                AAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                            <  1:2248339‑M1/91‑1 (MQ=255)

                                                 AAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTa                                           <  2:1264908‑M1/91‑1 (MQ=255)

                                                   GAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATg                                         <  2:465155‑M1/91‑1 (MQ=255)

                                                    aagcgaaggataaatttataacatccttcacttcttttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGt                                        >  1:581344‑M2/39‑91 (MQ=255)

                                                    AAGTGAAGGATGTTATAAATTTATCCTTCGCATCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGCAAAAAGAATTATGt                                        <  1:322850‑M1/91‑1 (MQ=255)

                                                     AGTGAAGGATGTTATAAAGTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                       >  2:834451‑M1/1‑91 (MQ=255)

                                                      GTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                      <  2:3651910‑M1/91‑1 (MQ=255)

                                                         aaGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGa                                   >  1:1201167/1‑91 (MQ=255)

                                                          aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                  <  1:2274846/91‑1 (MQ=255)

                                                          aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                  >  2:259798/1‑91 (MQ=255)

                                                          aGGATGTTATAAATTTATCCTCCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                  >  2:186899/1‑91 (MQ=255)

                                                            gATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAg                                <  1:2117814/91‑1 (MQ=255)

                                                             ataaatttataacatccttcgcttcttttTATTAATTTATTAATTAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAgg                               >  2:58294‑M2/30‑91 (MQ=255)

                                                             aTGTTATAAATTTATCCTTCGCTTCTTTTTATTAGTTTAGTAATGAATAGTCGAAAGAGAAGATGCGTAAAAAGAATTATGTTAAGATAgg                               >  2:1934171/1‑91 (MQ=255)

                                                             aTGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAgg                               >  2:2264976/1‑91 (MQ=255)

                                                             aTGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAgg                               >  2:342452/1‑91 (MQ=255)

                                                               gTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                             >  1:1562901/1‑91 (MQ=255)

                                                               gTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                             <  1:1879395/91‑1 (MQ=255)

                                                                ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTc                            <  1:981031/91‑1 (MQ=255)

                                                                  ataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                          >  2:2881130/1‑91 (MQ=255)

                                                                    aaaTTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                        >  2:3140542/1‑91 (MQ=255)

                                                                       tttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTag                     <  1:1193747/91‑1 (MQ=255)

                                                                       tttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTag                     <  1:1519478/91‑1 (MQ=255)

                                                                        ttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga                    <  2:2046964/91‑1 (MQ=255)

                                                                        ttATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga                    <  1:1699430/91‑1 (MQ=255)

                                                                        ttATCCTTCGCTTCTGTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga                    <  2:803897/91‑1 (MQ=255)

                                                                        ttATCCTTCGCTGCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTaga                    <  2:3617350/91‑1 (MQ=255)

                                                                        tgaTCCGTCGCTACAGTGTATTAATTTAGTAATGAATAGTGGAAAGAAAAGATGCGTAAATAGAATTATGTTAAGATAGGGTCAATCTaga                    <  2:2767803/89‑1 (MQ=255)

                                                                         tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTagag                   >  1:2993641/1‑91 (MQ=255)

                                                                          aTCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagt                  >  1:3132558/1‑91 (MQ=255)

                                                                            ccTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagcag                >  2:3747514/1‑91 (MQ=255)

                                                                              ttCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGtt              <  2:1807741/91‑1 (MQ=255)

                                                                                cGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTaa            >  1:1002958/1‑91 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     <  2:1724635‑M2/88‑1 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     <  2:952122‑M2/88‑1 (MQ=255)

                                                                                       tttTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     <  2:952705‑M2/88‑1 (MQ=255)

                                                                                       ttgtattaATTTAGTAATGAAGAGTAGAAAGAAAAGATGCGTAAAAAGAATGATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATaaa     <  2:3346541/88‑1 (MQ=255)

                                                                                         tTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATc   <  2:1584281‑M2/90‑1 (MQ=255)

AGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCG  >  USA300TCH1516_ALE/842572‑842752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.