BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	885377 =	157 (0.770)	15 (0.090)	12/134	NT	10.1%	intergenic (+6/+67)	pspB/argO	Putative phosphoserine phosphatase 2/Arginine exporter protein ArgO
*	?	USA300TCH1516_ALE	885422 =	137 (0.800)	15 (0.090)	12/134	NT	10.1%	intergenic (+51/+22)	pspB/argO	Putative phosphoserine phosphatase 2/Arginine exporter protein ArgO

Only 100 of 325 total aligned reads displayed.

TAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAATAAGTT  >  USA300TCH1516_ALE/885287‑885466

 aataTCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAA                                                                                          <  1:1185204‑M1/91‑1 (MQ=255)

 aataTCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAA                                                                                          <  2:2447013‑M1/91‑1 (MQ=255)

 aataTCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAA                                                                                          >  1:3448742‑M1/1‑91 (MQ=255)

  atatCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAA                                                                                         <  1:1927342‑M1/91‑1 (MQ=255)

  atatCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAA                                                                                         <  1:3392105‑M1/91‑1 (MQ=255)

     tCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCG                                                                                      <  1:784701‑M1/91‑1 (MQ=255)

     tCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCG                                                                                      <  1:2185051‑M1/91‑1 (MQ=255)

     agcataataattattattgttgctctgatgatattacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCg                                                                                      >  2:1467974‑M1/86‑91 (MQ=255)

     agcataataattattattgttgctctgatgatattacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCg                                                                                      >  1:3695065‑M1/86‑91 (MQ=255)

      gcataataattattattgttgctctgatgatattacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCGt                                                                                     >  2:708826‑M1/85‑91 (MQ=255)

      gcataataattattattgttgctctgatgatattacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCGt                                                                                     >  1:364754‑M1/85‑91 (MQ=255)

      cGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGT                                                                                     >  1:550826‑M1/1‑91 (MQ=255)

       ggTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTT                                                                                    <  2:1275858‑M1/91‑1 (MQ=255)

       ggTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTT                                                                                    >  1:2577797‑M1/1‑91 (MQ=255)

       ggTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTT                                                                                    <  1:1866325‑M1/91‑1 (MQ=255)

        ataataattattattgttgctctgatgatattataaagacttattcgattattattctagagcgttatgtagttgtattttaAAAGCGTta                                                                                   <  1:3161320‑M1/9‑1 (MQ=255)

         tAAGTGTAAAATCCTCAAATTTGAATTTGACAATGGAACATTTAAAAATGTTAAGAGAATTGATCCAAGGTTATAATAAAGAAAGCGTtat                                                                                  <  2:397755/91‑1 (MQ=255)

          aaTTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATA                                                                                 <  2:2036082‑M1/91‑1 (MQ=255)

          aaTTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATA                                                                                 >  1:3769067‑M1/1‑91 (MQ=255)

           ataattattattgttgctctgatgatattacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCGTTATAc                                                                                >  1:3045383‑M1/80‑91 (MQ=255)

           aTTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATAC                                                                                >  2:1938491‑M1/1‑91 (MQ=255)

            ttGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA                                                                               >  1:277116‑M1/1‑91 (MQ=255)

            ttGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACA                                                                               <  2:2521675‑M1/91‑1 (MQ=255)

            taattattattgttgctctgatgatattacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCGTTATACa                                                                               >  2:2155703‑M1/79‑91 (MQ=255)

              gTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATa                                                                             <  1:2633855/91‑1 (MQ=255)

                 atatCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGac                                                                          >  1:433203/1‑91 (MQ=255)

                 atatCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGATGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGac                                                                          >  2:3617008/1‑91 (MQ=255)

                   atCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGacac                                                                        >  1:135295/1‑91 (MQ=255)

                   atCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGacac                                                                        <  2:2086681/91‑1 (MQ=255)

                    tCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGAcaca                                                                       >  2:2109829/1‑91 (MQ=255)

                       tGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAaaagacatact                                                                    <  1:2466515‑M1/91‑12 (MQ=255)

                       tGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGt                                                                    <  2:2220672/91‑1 (MQ=255)

                       tGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGt                                                                    <  2:3048753/91‑1 (MQ=255)

                       tGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGt                                                                    >  2:1080535/1‑91 (MQ=255)

                       tGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGt                                                                    <  2:1785987/91‑1 (MQ=255)

                        gAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTa                                                                   <  1:1459337/91‑1 (MQ=255)

                        gAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTa                                                                   >  1:2135574/1‑91 (MQ=255)

                        gAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTa                                                                   >  2:7297/1‑91 (MQ=255)

                         tgctctgaggatattacaaaaacttattcaattattattctaaagcgttatgtagttgtatgttaAAAGCGTTATACATAGACACAAGTAt                                                                  >  2:3437607‑M1/66‑91 (MQ=255)

                         aaaTTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTAt                                                                  <  1:2020610/91‑1 (MQ=255)

                         aaaTTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTAt                                                                  <  2:1441629/91‑1 (MQ=255)

                          gctctgatgatattacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCGTTATACATAGACACAAGTATg                                                                 >  2:1285005‑M1/65‑91 (MQ=255)

                          aaTTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATg                                                                 <  2:1991646/91‑1 (MQ=255)

                            tttGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATgcc                                                               >  2:3174645/1‑89 (MQ=255)

                             ttGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCt                                                              >  1:1297234/1‑91 (MQ=255)

                              tGAATATGCCAATGGAACATTTAAATTTGTTGAGTTAATTGATCCACATTTATAATAAATAAAGCGTTATACATTGACACAAGTATGTCtt                                                             <  2:2401401/91‑1 (MQ=255)

                              tGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCtt                                                             >  1:1938576/1‑91 (MQ=255)

                               gAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCttt                                                            >  1:1597337/1‑91 (MQ=255)

                                aaTATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAaaagacatacttgtgtctat                                                           <  2:1895789‑M1/91‑21 (MQ=255)

                                aaTATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTt                                                           <  1:1646001‑M2/91‑2 (MQ=255)

                                 atatGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAaaagacatacttgtgtctatg                                                          <  2:458391‑M1/91‑22 (MQ=255)

                                 atatGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtg                                                          >  2:955833‑M2/1‑89 (MQ=255)

                                 atatGACAATGGAACATTTAAATTTGTTGAGTAAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtg                                                          <  2:3892491‑M2/91‑3 (MQ=255)

                                  tatGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAaaagacatacttgtgtctatgt                                                         <  1:1813496‑M1/91‑23 (MQ=255)

                                  tatGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtgt                                                         <  2:3841458‑M2/91‑4 (MQ=255)

                                   atGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtgta                                                        <  2:1375406‑M2/91‑5 (MQ=255)

                                      aCAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtgtataa                                                     >  1:3904819‑M2/1‑84 (MQ=255)

                                       tacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAAc                                                    >  2:2859861‑M1/52‑91 (MQ=255)

                                       tacaaaaacttattcaattattattctaaagcgttatgtagttgtattttaAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAAc                                                    >  2:132084‑M1/52‑91 (MQ=255)

                                        aaTGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACAaaagacatacttgtgtctatgtataacg                                                   <  2:2984245‑M1/91‑29 (MQ=255)

                                        aaTGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtgtataacg                                                   <  1:2348750‑M2/91‑10 (MQ=255)

                                          tGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtgtataacgct                                                 >  1:3827712‑M2/1‑80 (MQ=255)

                                           ggAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTtgtataacgctt                                                >  2:1195601‑M2/1‑79 (MQ=255)

                                            taacATTTAAATTTGTTGAGTTAATCGATCCAAATTTATAATAAATAAAGCGTTATACAaaagacctacttctgcctatgtataacgcttt                                               <  1:603133‑M1/90‑33 (MQ=255)

                                             aaCATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCtttt                                              <  2:3082755/91‑1 (MQ=255)

                                             aaCATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCtttt                                              >  1:2734160/1‑91 (MQ=255)

                                              aCATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGAATGTCTTTTGTATAACGCTTTTa                                             >  1:298918/1‑91 (MQ=255)

                                                aTTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTaaa                                           <  1:2950608/91‑1 (MQ=255)

                                                 tttAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTaaaa                                          >  2:440184/1‑91 (MQ=255)

                                                      aTTTGTTGAGTTAATAGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAACTATGTCTTTTGTATAACGCTTTTAAAATACaa                                     >  1:3362915/1‑91 (MQ=255)

                                                       tttGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAAc                                    <  2:3313774/91‑1 (MQ=255)

                                                         tgttgAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTa                                  >  2:1681341/1‑91 (MQ=255)

                                                          gttgAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTAc                                 <  2:2572501/91‑1 (MQ=255)

                                                           ttgAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACa                                <  2:2375573/91‑1 (MQ=255)

                                                           ttgAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACa                                >  1:663786/1‑91 (MQ=255)

                                                             gAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATa                              >  2:368566/1‑91 (MQ=255)

                                                              aGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATaa                             >  2:3500871/1‑91 (MQ=255)

                                                                 tAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAGATACAACTACATAACGc                          <  2:2339991/91‑1 (MQ=255)

                                                                   aTTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCtt                        >  2:3648499/1‑91 (MQ=255)

                                                                    ttGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCttt                       >  1:913826/1‑91 (MQ=255)

                                                                    ttGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCttt                       <  1:925719/91‑1 (MQ=255)

                                                                      gATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAg                     >  2:797776/1‑91 (MQ=255)

                                                                       aTCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGa                    <  1:3211563/91‑1 (MQ=255)

                                                                         ccAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGaat                  >  2:106300/1‑91 (MQ=255)

                                                                         ccAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGaat                  >  2:933486/1‑91 (MQ=255)

                                                                         ccAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGaat                  >  2:1734352/1‑91 (MQ=255)

                                                                           aaaTTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGaataa                >  1:3568550/1‑91 (MQ=255)

                                                                           aaaTTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGaataa                >  2:638027/1‑91 (MQ=255)

                                                                           aaaTTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGaataa                >  1:1486522/1‑91 (MQ=255)

                                                                            aaTTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAACACAACTAAATAACGCTTTAGaataat               >  2:506246/1‑91 (MQ=255)

                                                                               ttATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGaataataat            >  2:1801397/1‑91 (MQ=255)

                                                                                tataATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAAtt           >  2:2726163/1‑91 (MQ=255)

                                                                                 ataataAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTg          >  1:834582/1‑91 (MQ=255)

                                                                                  taataaATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGa         >  1:2097835/1‑91 (MQ=255)

                                                                                    ataaataaAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAAt       >  1:1078486/1‑91 (MQ=255)

                                                                                     taaataaaGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAATa      >  1:331174/1‑91 (MQ=255)

                                                                                     taaataaaGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAATa      <  2:3740146/91‑1 (MQ=255)

                                                                                     taaataaaGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAATa      >  2:1223911/1‑91 (MQ=255)

                                                                                     taaataaaGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAATa      <  1:2046933/91‑1 (MQ=255)

                                                                                       aataaaGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAATAAg    >  2:2615821/1‑91 (MQ=255)

TAATATCGGTAATTGTAATATCCTGAAATTTGAATATGACAATGGAACATTTAAATTTGTTGAGTTAATTGATCCAAATTTATAATAAATAAAGCGTTATACATAGACACAAGTATGTCTTTTGTATAACGCTTTTAAAATACAACTACATAACGCTTTAGAATAATAATTGAATAAGTT  >  USA300TCH1516_ALE/885287‑885466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.