BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 940821	193 (0.950)	13 (0.070)	6/148	NT	7.2%	intergenic (+2/+54)	USA300HOU_RS04680/ptlE	Putative esterase/Neopentalenolactone D synthase
*	?	USA300TCH1516_ALE	= 940872	156 (0.830)	13 (0.070)	6/148	NT	7.2%	intergenic (+53/+3)	USA300HOU_RS04680/ptlE	Putative esterase/Neopentalenolactone D synthase

Only 100 of 263 total aligned reads displayed.

CACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTG  >  USA300TCH1516_ALE/940731‑940910

cacaTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAA                                                                                           >  2:1527709‑M1/1‑91 (MQ=255)

 acaTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAg                                                                                          <  1:1274594/91‑1 (MQ=255)

 acaTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAg                                                                                          >  1:2640711/1‑91 (MQ=255)

   aTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGaa                                                                                        <  2:2260473/91‑1 (MQ=255)

    tGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAAc                                                                                       >  1:3440745/1‑91 (MQ=255)

      tATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTg                                                                                     <  1:3832852/91‑1 (MQ=255)

      tATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTg                                                                                     >  1:305175/1‑91 (MQ=255)

        tGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCt                                                                                   <  1:3928206/91‑1 (MQ=255)

        tGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCt                                                                                   >  1:3012108/1‑91 (MQ=255)

            atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                               <  1:58396/91‑1 (MQ=255)

            atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                               >  1:1145516/1‑91 (MQ=255)

            atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                               >  2:300623/1‑91 (MQ=255)

            atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                               >  1:1937278/1‑91 (MQ=255)

            atatAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCt                                                                               <  1:2337931/91‑1 (MQ=255)

             tataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTg                                                                              >  2:2437226/1‑91 (MQ=255)

              ataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGa                                                                             >  2:2009258/1‑91 (MQ=255)

              ataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGa                                                                             <  2:2694352/91‑1 (MQ=255)

              ataAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGa                                                                             >  1:716841/1‑91 (MQ=255)

                aaaaaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGaaa                                                                           <  1:3279124/91‑1 (MQ=255)

                aaaaaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGaaa                                                                           <  1:3511686/91‑1 (MQ=255)

                aaaaaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGaaa                                                                           <  1:1054699/91‑1 (MQ=255)

                   aaTTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGt                                                                        >  2:2796454/1‑91 (MQ=255)

                      tAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTAt                                                                     <  2:1720940/91‑1 (MQ=255)

                        aGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATga                                                                   <  2:2487804/91‑1 (MQ=255)

                        aGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATga                                                                   <  1:2412469/91‑1 (MQ=255)

                         gAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgag                                                                  >  1:439823/1‑91 (MQ=255)

                          aaTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgaga                                                                 >  2:3532929/1‑91 (MQ=255)

                          aaTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgaga                                                                 <  1:62760/91‑1 (MQ=255)

                           aTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGat                                                                <  1:699/91‑1 (MQ=255)

                           aTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGat                                                                <  1:3540326/91‑1 (MQ=255)

                           aTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGat                                                                <  1:3642194/91‑1 (MQ=255)

                            tGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGata                                                               >  1:54697/1‑91 (MQ=255)

                             gACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGatat                                                              <  1:2996340/91‑1 (MQ=255)

                               cAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTc                                                            <  2:3944668/91‑1 (MQ=255)

                                 aaGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCAt                                                          <  1:2111523/91‑1 (MQ=255)

                                 aaGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCAt                                                          <  1:3757701/91‑1 (MQ=255)

                                 aaGAACAATGAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCAt                                                          <  1:2534630/91‑1 (MQ=255)

                                  aGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATa                                                         <  2:2295948/91‑1 (MQ=255)

                                   gAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATaa                                                        <  2:2729835/91‑1 (MQ=255)

                                   gAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATaa                                                        >  2:1209964/1‑91 (MQ=255)

                                    aaCAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAAGCTTTAAAATAAAAgaactgctagccgtagttatgaatatctcataacat                                                       <  2:3466881‑M1/91‑37 (MQ=255)

                                    aaCAATTAAGTACAGTTATGCGGGGTAGAGTTGCTAGTAAACGTTTAAAATAAAAGAACTGCGAGCTGAAATGTTATGAGAGATTCATAAc                                                       <  2:1090976/91‑1 (MQ=255)

                                     aCAATTAATTACAGTTATGCGTGGTACAGTTGCTAGTAAACCTTTAAAATAAAAaaactgctagccgtagttatgaatatctcataacatt                                                      <  2:2464627‑M1/91‑38 (MQ=255)

                                      cAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAgaactgctagccgtagttatgaatatctcataacattt                                                     <  1:3602646‑M1/91‑39 (MQ=255)

                                      cAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTa                                                     >  1:1415957/1‑91 (MQ=255)

                                      cAATTAATGACAGTTATGCGTGGTACAGTGGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTa                                                     <  2:2559730/91‑1 (MQ=255)

                                       aattaattACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTAc                                                    >  2:884749/1‑91 (MQ=255)

                                        attaattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACg                                                   >  1:16202/1‑91 (MQ=255)

                                        attaattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACg                                                   <  1:308555/91‑1 (MQ=255)

                                         ttaattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAgaactgctagccgtagttatgaatatctcataacatttcag                                                  <  1:1511764‑M1/91‑42 (MQ=255)

                                          taattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGc                                                 <  2:3828612/91‑1 (MQ=255)

                                          taattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGc                                                 >  2:69580/1‑91 (MQ=255)

                                          taattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGc                                                 >  1:1349356/1‑91 (MQ=255)

                                           aattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAgaactgctagccgtagttatgaatatctcataacatttcagct                                                <  1:3344070‑M1/91‑44 (MQ=255)

                                           aattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCt                                                >  1:2598332/1‑91 (MQ=255)

                                           aattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCt                                                <  2:111534/91‑1 (MQ=255)

                                           aattaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCt                                                >  2:2914221/1‑91 (MQ=255)

                                            attaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTa                                               <  2:1510713/91‑1 (MQ=255)

                                            attaCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTa                                               <  2:1339917/91‑1 (MQ=255)

                                              taCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGc                                             <  2:1424875/91‑1 (MQ=255)

                                              taCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGc                                             >  2:3381816/1‑91 (MQ=255)

                                              taCAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGc                                             <  1:841657/91‑1 (MQ=255)

                                                  gTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtt                                         <  1:2777765/91‑1 (MQ=255)

                                                     aTGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTtt                                      >  1:1083119‑M2/1‑89 (MQ=255)

                                                      tGCGTGGTACGGTTGCTATTAGACCTTTAAAGGAAAAaaactgctagccgtgggtatgaatatctcataacatttcagctagcagttcttt                                     <  2:1375074‑M1/91‑55 (MQ=255)

                                                      tGCGTGGTACAGTTGCTATTAAACCTTTAAGCTAAAAGAACTGCTAGCTGAATTGTTATGCGATGTGCATAGCTACGGCGAGCAGTTTttt                                     >  2:867219‑M2/1‑88 (MQ=255)

                                                      tGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAaaactgctagccgtagttatgaatatctcataacgtttcagctagcagttcttt                                     <  2:3449293‑M1/91‑55 (MQ=255)

                                                      tGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTttt                                     >  2:867171‑M2/1‑88 (MQ=255)

                                                       gCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTtttt                                    <  2:3723924‑M2/91‑5 (MQ=255)

                                                         gTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTttttat                                  <  2:783138‑M2/91‑7 (MQ=255)

                                                          tGGTACAGTTGCTATTAAACCTTTAAAATAAAAaaactgctagccgtagttatgaatatctcataacatttcagctagcagttcttttatt                                 <  1:3715755‑M1/91‑59 (MQ=255)

                                                           ggTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATgc                                >  2:3740072/1‑91 (MQ=255)

                                                               cAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCta                            >  1:2655174/1‑91 (MQ=255)

                                                                  ttGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTatat                         >  2:2200459/1‑91 (MQ=255)

                                                                   tGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAtt                        >  2:862927/1‑91 (MQ=255)

                                                                   tGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAtt                        >  1:2731307/1‑91 (MQ=255)

                                                                     cTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgt                      >  2:738257/1‑91 (MQ=255)

                                                                      tATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgtt                     <  2:2371248/91‑1 (MQ=255)

                                                                       aTTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgttg                    >  1:956637/1‑91 (MQ=255)

                                                                       aTTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgttg                    <  1:2009258/91‑1 (MQ=255)

                                                                        ttAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATtgttgt                   >  1:571181/1‑91 (MQ=255)

                                                                        ttAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATtgttgt                   >  2:101993/1‑91 (MQ=255)

                                                                        ttAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATtgttgt                   >  2:3706025/1‑91 (MQ=255)

                                                                            aCCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGtt               <  1:2987404/91‑1 (MQ=255)

                                                                              cTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGtttt             >  2:3098901/1‑91 (MQ=255)

                                                                              cTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGtttt             >  1:2888762/1‑91 (MQ=255)

                                                                              cTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGtttt             >  1:763628/1‑91 (MQ=255)

                                                                              cTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGtttt             >  2:2144394/1‑91 (MQ=255)

                                                                               tttAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTa            <  2:2101688/91‑1 (MQ=255)

                                                                                ttAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAg           >  2:1194462/1‑91 (MQ=255)

                                                                                 taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGa          >  2:56372/1‑91 (MQ=255)

                                                                                 taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGa          >  1:184148/1‑91 (MQ=255)

                                                                                   aaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGaaa        <  2:2051931/91‑1 (MQ=255)

                                                                                     ataaaaaaactgctagccgtagttatgaatatctcataacatttcagctagcagttcttttattttaaaggtttaatagcaactgtaccac      >  1:2565808‑M1/1‑6 (MQ=255)

                                                                                     ataaaaaaactgctagccgtagttatgaatatctcataacatttcagctagcagttcttttattttaaaggtttaatagcaactgtaccac      <  1:224587‑M1/91‑86 (MQ=255)

                                                                                      taaaaaaactgctagccgtagttatcaatatctcataacatttcagctagcagttcttttattttaaaggtttaatagcaactgtaccacg     <  1:3680127‑M1/91‑87 (MQ=255)

                                                                                       aaaaGAACTGCTAGCTGAAATGCTATGAGATATTCATCACTCCGCCTAGCAGTGTTTTTATCGGCTGCATTGTTATACTTTTATATATGCt    >  2:2579993/1‑91 (MQ=255)

                                                                                        aaaGAACTGCTAGCTGAAATGTTATGCGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTTTTGTAGTATTAGCAATGttt   >  2:3283072/1‑91 (MQ=255)

                                                                                         aaaaactgctagccgtagttatgaatatctcataacatttcagctagcagttcttttattttaaaggtttaatagcaactgtaccacgcat  >  1:1082623‑M1/1‑2 (MQ=255)

                                                                                         aaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTttttattttaaaggtttaatagcaactgtaccacgcat  <  2:3627934‑M2/91‑39 (MQ=255)

CACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTG  >  USA300TCH1516_ALE/940731‑940910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.