BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	954695 =	166 (0.810)	32 (0.170) +GGCAAG	12/148	NT	15.5%	intergenic (+349/+154)	gluD/glpQ_1	NAD‑specific glutamate dehydrogenase/Glycerophosphodiester phosphodiesterase
*	?	USA300TCH1516_ALE	1873938 =	213 (1.050)	32 (0.170) +GGCAAG	12/148	NT	15.5%	intergenic (‑614/+136)	USA300HOU_RS09300/USA300HOU_RS09305	Putative dipeptidase/hypothetical protein

Only 100 of 216 total aligned reads displayed.

ATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGGAAATAT  >  USA300TCH1516_ALE/954605‑954785

aTTAGCTCCTCACTTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTg                                                                                            <  1:2998123/91‑1 (MQ=255)

aTTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTg                                                                                            <  1:3461230/91‑1 (MQ=255)

  tAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTggg                                                                                          <  1:1912296/91‑1 (MQ=255)

   aGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTgggg                                                                                         >  2:2655350/1‑91 (MQ=255)

   aGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTgggg                                                                                         >  1:3097858/1‑91 (MQ=255)

       cctcAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTGAGCTTACAATAGTGTGCAAGTTGGGGTggg                                                                                     >  2:1185901/1‑91 (MQ=255)

           aaTTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGgacga                                                                                 >  1:3846147/1‑91 (MQ=255)

               tCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaa                                                                             >  1:3084260/1‑91 (MQ=255)

               tCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaa                                                                             <  1:1239155/91‑1 (MQ=255)

               tCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaa                                                                             >  1:712862/1‑91 (MQ=255)

                cTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaa                                                                            <  1:3312425/91‑1 (MQ=255)

                cTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaa                                                                            >  1:997487/1‑91 (MQ=255)

                cTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaa                                                                            <  1:1950362/91‑1 (MQ=255)

                 tACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATATTGTGCAAGTTGGGGTGGGACGACGaaat                                                                           >  2:666602/1‑91 (MQ=255)

                  aCAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaata                                                                          >  1:3829809/1‑91 (MQ=255)

                    aGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaataaa                                                                        >  1:2658250/1‑91 (MQ=255)

                    aGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaataaa                                                                        >  2:1856282/1‑91 (MQ=255)

                     gACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaataaat                                                                       >  1:2090399/1‑91 (MQ=255)

                     gACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaataaat                                                                       >  2:3081480/1‑91 (MQ=255)

                      aCAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGaaataaatg                                                                      <  1:1782287/91‑2 (MQ=255)

                      aCAATGCAAGTTGGCGGGGCCCCAACACAGAAGCGGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAAtt                                                                      <  2:295355/91‑1 (MQ=255)

                         aTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTg                                                                   >  2:3447669/1‑91 (MQ=255)

                         aTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTg                                                                   <  2:1154456/91‑1 (MQ=255)

                           gCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCg                                                                 >  1:2475398/1‑91 (MQ=255)

                           gCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGCGTGCAAGTTGGGGGGGGACGACGAACTAAATATTGCg                                                                 >  2:1392738/1‑91 (MQ=17)

                           gCAAGTTGGCGGGGCCCCAACACAGAAGCGGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCg                                                                 <  2:32486/91‑1 (MQ=255)

                            caagggtgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaaccttgctGGGGTGGGACGACGAACTAAATTTTGCGa                                                                <  2:2739459‑M1/29‑1 (MQ=255)

                            cAAGGTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGa                                                                <  2:1272214/91‑1 (MQ=255)

                              aGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGaaa                                                              <  1:743278/91‑1 (MQ=255)

                              aGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGaaa                                                              <  2:1338925/91‑1 (MQ=255)

                              aGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGaaa                                                              >  1:3736079/1‑91 (MQ=255)

                               gTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGaaaa                                                             >  1:1504372/1‑91 (MQ=255)

                               gTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGaaaa                                                             >  1:1504276/1‑91 (MQ=255)

                                ttgactagaattgaaaaaagcttgttacaagcgtattttcattcagtcaactactgccGGGGTGGGACGACGAAATAAATTTTGCTAAAat                                                            <  2:943117‑M1/33‑1 (MQ=255)

                                ttGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAat                                                            <  1:509865/91‑1 (MQ=255)

                                 ttgactagaattgaaaaaagcttgttacaagcgcattttcgttcagtcaaccttgctGGGGTGGGACGACGAAATAAATTTTGCGAAAata                                                           <  1:1436451‑M1/34‑1 (MQ=255)

                                 tGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAata                                                           <  1:1362252/91‑1 (MQ=255)

                                  ggCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAatat                                                          <  1:238234/91‑1 (MQ=255)

                                   gCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATc                                                         >  1:2175334/1‑91 (MQ=255)

                                      tagaattgaaaaaagcttgttacaagcgtattttcattcagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTGCtaaaatatgatt                                                      <  1:917110‑M1/39‑5 (MQ=255)

                                      gggCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAtt                                                      <  1:1527965/91‑1 (MQ=255)

                                      gggCCCCAACACAGAAGCTGGCGAAAAGTCAGATTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAtt                                                      <  1:3389455/91‑1 (MQ=255)

                                       agaattgaaaaaagcttgttacaagcgtattttcattcagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTGCTAAAATATGAttt                                                     <  2:1795323‑M1/40‑1 (MQ=255)

                                       agaattgaaaaaagcttgttacaagcgcattttcgttcagtcaaccttgctGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAttt                                                     <  2:3811964‑M1/40‑1 (MQ=255)

                                         ccccAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCt                                                   >  1:593887/1‑91 (MQ=255)

                                         aattgaaaaaagcttgttacaagcgtattttcattcagtcaaccttgccGGTGCGGGACGACGAAATAACTTTTGCTAAAATATGATTTCt                                                   <  2:3103120‑M1/42‑1 (MQ=255)

                                         aattgaaaaaagcttgttacaagcgtattttcattcagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTGCTAAAATATGATTTCt                                                   <  2:2851821‑M1/42‑1 (MQ=255)

                                          tgaaaaaagcttgttacaagcgaattttcaattctagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTACGAAAATATCATTTCTg                                                  <  2:2812579‑M1/43‑1 (MQ=255)

                                          cccAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTg                                                  >  1:1614305/1‑91 (MQ=255)

                                          attgaaaaaagcttgttacaagcgtattttcattcagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTGCTAAAATATGATTTCTg                                                  <  2:873426‑M1/43‑1 (MQ=255)

                                           ccAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGt                                                 >  2:766441/1‑91 (MQ=255)

                                           ccAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGt                                                 >  2:1071445/1‑91 (MQ=255)

                                            cAACACAGGAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTTCGAAAATATCATTTCTGTc                                                <  2:3456578/91‑1 (MQ=255)

                                            aaaaaagcttgttacaagcgtattttcaattctagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTGCTAAAATATGATTTCTGTc                                                <  2:2076300‑M1/45‑1 (MQ=255)

                                             aaaaagcttgttacaagcgaattttcaattctagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTACGAAAATATCATTTCTGTcc                                               <  2:2144104‑M1/46‑1 (MQ=255)

                                             aaaaagcttgttacaagcgaattttcaattctagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTACGAAAATATCATTTCTGTcc                                               <  1:2890871‑M1/46‑1 (MQ=255)

                                             aaaaagcttgttacaagcgaattttcaattctagtcaaccttgccGGGGTGGGACGACGAAATAAATTTTACGAAAATATCATTTCTGTcc                                               <  1:2890500‑M1/46‑1 (MQ=255)

                                              acacAGAGGCTGGCGAAATGTCAGCATACGATAGTGGTCAAGTTGGAGTGGGACGACGAAATGAAATTTGCGAAAATATCAtttctttcgt                                              <  2:518442/91‑3 (MQ=14)

                                              acacAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTccc                                              >  1:2500654/1‑91 (MQ=255)

                                              acacAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTccc                                              <  2:1833345/91‑1 (MQ=255)

                                                acaGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCAc                                            <  2:3164265/91‑1 (MQ=255)

                                                  aGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTc                                          >  1:387301/1‑91 (MQ=255)

                                                  aGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACAACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTc                                          <  1:2252823/91‑1 (MQ=255)

                                                   gAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTcc                                         >  2:1982898/1‑91 (MQ=255)

                                                    aaGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTccc                                        >  2:2539842/1‑91 (MQ=255)

                                                    aaGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTccc                                        >  1:334720/1‑91 (MQ=255)

                                                    aaGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTccc                                        >  1:333117/1‑91 (MQ=255)

                                                     ggCTGGCGGAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCa                                       <  2:323647/90‑1 (MQ=25)

                                                     aGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCa                                       >  2:2948202/1‑91 (MQ=255)

                                                     aGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCa                                       >  1:1684951/1‑91 (MQ=255)

                                                     aGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCa                                       <  1:2993013/91‑1 (MQ=255)

                                                      gCTGGCGTAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCaa                                      <  2:3511526/91‑1 (MQ=255)

                                                      gCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCaa                                      >  1:3758096/1‑91 (MQ=255)

                                                         ggCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCaaaaa                                   >  2:3385915/1‑91 (MQ=255)

                                                           cGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGa                                 >  1:1135811/1‑91 (MQ=255)

                                                           cGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGa                                 <  1:1001015/91‑1 (MQ=255)

                                                               aaGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGAcagc                             >  2:839687/1‑91 (MQ=255)

                                                                 gTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGAcagcag                           >  1:859454/1‑91 (MQ=255)

                                                                  tCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGt                          >  1:3264895/1‑91 (MQ=255)

                                                                   cAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTa                         >  2:885129/1‑91 (MQ=255)

                                                                     gCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAgg                       >  1:662292/1‑91 (MQ=255)

                                                                     gCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAgg                       >  2:856123/1‑91 (MQ=255)

                                                                     gCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAgg                       <  1:1322702/91‑1 (MQ=255)

                                                                      cTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGa                      <  2:2421562/91‑1 (MQ=255)

                                                                      cTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGa                      >  1:1448315/1‑91 (MQ=255)

                                                                       ttACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGAt                     <  1:3892338/91‑1 (MQ=255)

                                                                       ttACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGAt                     <  1:3137506/91‑1 (MQ=255)

                                                                        tACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATa                    <  2:1790663/91‑1 (MQ=255)

                                                                         aCAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATaa                   <  1:20048/91‑1 (MQ=255)

                                                                         aCAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATaa                   <  1:20035/91‑1 (MQ=255)

                                                                          cAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAAt                  <  2:1122152/91‑1 (MQ=255)

                                                                            aTAGTGAGAAAGTTGGGGTGGGACGACGAAATAAATTGTGCGAAAATATCAGTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAAttt                <  2:36924/91‑1 (MQ=18)

                                                                             tAGTGTGCAAGTTGGGGTGGGACGACTAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTc               >  2:2238639/1‑91 (MQ=255)

                                                                               gtgtGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCaa             <  2:3459713/91‑1 (MQ=255)

                                                                               gtgtGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCaa             >  2:1691762/1‑91 (MQ=255)

                                                                                tgtgCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAAt            >  2:2707123/1‑91 (MQ=255)

                                                                                tgtgCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAAt            <  2:2651071/91‑1 (MQ=255)

                                                                                 gtgCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAAtt           >  1:839522/1‑91 (MQ=255)

                                                                                  tgCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAAttt          >  1:2340697/1‑91 (MQ=255)

                                                                                         tGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGGAAata   >  2:3563016/1‑91 (MQ=255)

ATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGGAAATAT  >  USA300TCH1516_ALE/954605‑954785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.