BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1046337	153 (0.750)	10 (0.050)	6/148	NT	6.6%	coding (477/939 nt)	menA	1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase
*	?	USA300TCH1516_ALE	= 1046354	143 (0.760)	10 (0.050)	6/148	NT	6.6%	coding (460/939 nt)	menA	1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase

Only 100 of 236 total aligned reads displayed.

AGGTACACTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGT  >  USA300TCH1516_ALE/1046247‑1046427

 ggTACACTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTg                                                                                           <  2:2187428/91‑1 (MQ=255)

 ggTACACTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTg                                                                                           >  2:3374969/1‑91 (MQ=255)

  gTACACTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTga                                                                                          <  2:2329555/91‑1 (MQ=255)

   tACACTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACTCCTgag                                                                                         <  1:3080695/91‑1 (MQ=255)

    acacTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTgaga                                                                                        >  1:1438387/1‑91 (MQ=255)

     cacTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGaa                                                                                       >  1:3754243/1‑91 (MQ=255)

      acTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAGTAACGATAATAAACATACCCATAAATACGCCTGAGaat                                                                                      >  1:2163614/1‑91 (MQ=255)

      acTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAGTAACGATAATAAACATACCCATAAATACGCCTGAGaat                                                                                      >  1:2162575/1‑91 (MQ=255)

       cTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGaata                                                                                     <  2:1708019/91‑1 (MQ=255)

        ttAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGaataa                                                                                    >  1:3313880/1‑91 (MQ=255)

        ttAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGaataa                                                                                    >  1:3397454/1‑91 (MQ=255)

        ttAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGaataa                                                                                    >  2:3200055/1‑91 (MQ=255)

         tAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGaataat                                                                                   <  1:1896876/91‑1 (MQ=255)

         tAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGaataat                                                                                   >  1:3931799/1‑91 (MQ=255)

          aaCCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAAtt                                                                                  <  2:961548/91‑1 (MQ=255)

          aaCCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAAtt                                                                                  >  2:1368185/1‑91 (MQ=255)

          aaCCAAATTACATAACGTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAAtt                                                                                  <  2:3787143/91‑1 (MQ=255)

           aCCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTc                                                                                 >  2:1505669/1‑91 (MQ=255)

           aCCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTc                                                                                 <  1:690327/91‑1 (MQ=255)

            ccAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCa                                                                                >  2:67249/1‑91 (MQ=255)

             cAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCAc                                                                               <  1:3797515/91‑1 (MQ=255)

                   aCATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTttcggtgaattattctcag                                                                         <  2:3135397‑M1/91‑20 (MQ=255)

                   aCATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTttcggtgaattattctcag                                                                         <  2:3135520‑M1/91‑20 (MQ=255)

                   aCATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAag                                                                         >  2:2717644‑M2/1‑89 (MQ=255)

                    cATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTttcggtgaattattctcagg                                                                        <  2:2426980‑M1/91‑21 (MQ=255)

                    cATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTttcggtgaattattctcagg                                                                        <  2:2427494‑M1/91‑21 (MQ=255)

                    cATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAagg                                                                        >  1:3836836‑M2/1‑88 (MQ=255)

                     aTAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTttcggtgaattattctcaggc                                                                       <  1:1040217‑M1/91‑22 (MQ=255)

                     aTAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggc                                                                       <  1:2669368‑M2/91‑5 (MQ=255)

                     aTAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggc                                                                       <  1:3774643‑M2/91‑5 (MQ=255)

                     aTAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggc                                                                       >  1:2715554‑M2/1‑87 (MQ=255)

                      tAACTTTTAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                      >  2:3511780‑M2/1‑86 (MQ=255)

                      tAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                      >  1:2880643‑M2/1‑86 (MQ=255)

                      tAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                      >  2:3250276‑M2/1‑86 (MQ=255)

                        aCTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTc                                                                    >  1:1641308/1‑91 (MQ=255)

                        aCTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTc                                                                    <  2:3463525/91‑1 (MQ=255)

                         cTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTcc                                                                   <  1:1674376/91‑1 (MQ=255)

                         cTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTcc                                                                   <  1:1196541/91‑1 (MQ=255)

                         cTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTcc                                                                   <  2:3860149/91‑1 (MQ=255)

                          tttGAGAATTGCCAGTTTGAAAAAAGAATGCCATAACGATCATAAGCATACCCATGAATCCGCCTGTGAATAATTCACCGAAAGGCGTCCa                                                                  <  2:3640247/91‑1 (MQ=255)

                          tttGAATATTGCAAGGTTGAAGAAAGAGTGCAATAACGATAATAAGCAAGCCCAGATATACGCCTGAGAATAATTCACCGAAAGGCGTCCa                                                                  <  2:1610971/91‑1 (MQ=255)

                           ttGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCAt                                                                 <  2:1790353/91‑1 (MQ=255)

                              aaTATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGaa                                                              <  1:1545167/91‑1 (MQ=255)

                               atatTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATAAGCCTGAGAATAATTCACCGAAAGGCGTCCATGaaa                                                             >  2:2558258/1‑91 (MQ=255)

                                tatTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAAt                                                            >  2:596389/1‑91 (MQ=255)

                                 atTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATa                                                           >  1:3305773/1‑91 (MQ=255)

                                  ttGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAg                                                          <  1:708652/91‑1 (MQ=255)

                                    gCCAGTTTGAATAAAGAATGCAATTACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAggg                                                        <  2:3666513/91‑1 (MQ=255)

                                    gCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAggg                                                        >  1:1555701/1‑91 (MQ=255)

                                      cAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGaa                                                      >  2:3885469/1‑91 (MQ=255)

                                       aGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGaaa                                                     >  2:1839392/1‑91 (MQ=255)

                                         tttGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGGCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAgg                                                   <  2:3051896/91‑1 (MQ=255)

                                         tttGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAgg                                                   >  1:3632502/1‑91 (MQ=255)

                                          ttGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAggg                                                  <  1:3910070/91‑1 (MQ=255)

                                            gAATAAAGAATGCAATAACGATAATAAACATACCCATAAATATGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGcc                                                >  2:1468166/1‑91 (MQ=255)

                                            gAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGcc                                                <  1:946471/91‑1 (MQ=255)

                                            gAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGcc                                                >  2:734213/1‑91 (MQ=255)

                                               tAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCAcc                                             <  1:92371/91‑1 (MQ=255)

                                               tAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCAcc                                             <  2:2845633/91‑1 (MQ=255)

                                                 aaGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTg                                           >  2:2703273/1‑91 (MQ=255)

                                                 aaGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTg                                           <  1:3438715/91‑1 (MQ=255)

                                                     aTGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtata                                       >  2:2999287/1‑91 (MQ=255)

                                                      tGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatat                                      >  1:1521930/1‑91 (MQ=255)

                                                      tGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatat                                      <  1:2414959/91‑1 (MQ=255)

                                                      tGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatat                                      <  1:1496206/91‑1 (MQ=255)

                                                       gCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatata                                     <  1:1113344/91‑1 (MQ=255)

                                                       gCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatata                                     >  1:3542875/1‑91 (MQ=255)

                                                        cAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAg                                    >  1:444165/1‑91 (MQ=255)

                                                          aTAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGt                                  >  2:2064302/1‑91 (MQ=255)

                                                             aCGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAAc                               <  1:2839739/91‑1 (MQ=255)

                                                                 taataaACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAAc                           <  2:453903/91‑1 (MQ=255)

                                                                 taataaACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAAc                           <  1:2466718/91‑1 (MQ=255)

                                                                 taataaACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAAc                           <  1:3054078/91‑1 (MQ=255)

                                                                  aataaACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACa                          <  2:2816664/91‑1 (MQ=255)

                                                                   ataaACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAg                         >  2:3481124/1‑91 (MQ=255)

                                                                      aaCATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCca                      >  1:2735335/1‑91 (MQ=255)

                                                                       aCATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcat                     >  1:2265585/1‑91 (MQ=255)

                                                                       aCATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcat                     >  2:2113703/1‑91 (MQ=255)

                                                                        cATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcata                    <  1:484311/91‑1 (MQ=255)

                                                                        cATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcata                    >  2:3825851/1‑91 (MQ=255)

                                                                         aTACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcatac                   <  1:2114585/91‑1 (MQ=255)

                                                                          tACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcataca                  >  1:3453071/1‑91 (MQ=255)

                                                                                tAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTaa            >  1:2536831/1‑91 (MQ=255)

                                                                                tAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTaa            <  2:113667/91‑1 (MQ=255)

                                                                                 aaaTACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAAt           <  2:917367/91‑1 (MQ=255)

                                                                                    ggcgcCTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagt        <  2:1035816‑M1/89‑85 (MQ=255)

                                                                                      cGCCTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagtta      <  1:787852‑M1/91‑87 (MQ=255)

                                                                                      cGCCTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagtta      >  2:2815002‑M1/1‑5 (MQ=255)

                                                                                      cGCCTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagtta      <  1:2015013‑M1/91‑87 (MQ=255)

                                                                                      cGCCTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagtta      <  1:130540‑M1/91‑87 (MQ=255)

                                                                                      cGCCTGAGAATAATTCACCGAAaggcgtatttatgggtatgtttattatcgttattgcattctctattcaaactggcaatatccaaagttc      <  2:1776215‑M2/91‑70 (MQ=255)

                                                                                      cGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAAc      >  1:463466/1‑91 (MQ=255)

                                                                                      cGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAAc      >  1:2326301/1‑91 (MQ=255)

                                                                                      cGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAAc      >  2:3132289/1‑91 (MQ=255)

                                                                                       gCCTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttat     <  1:2668103‑M1/91‑88 (MQ=255)

                                                                                       gCCTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttat     <  1:2626784‑M1/91‑88 (MQ=255)

                                                                                       gCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACt     <  1:265101/91‑1 (MQ=255)

                                                                                        ccTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttatg    >  2:1112125‑M1/1‑3 (MQ=255)

                                                                                        ccTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttatg    <  2:3808554‑M1/91‑89 (MQ=255)

                                                                                        ccTttcggtgaattattctcaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttatg    >  1:1533033‑M1/1‑3 (MQ=255)

AGGTACACTTAACCAAATTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGT  >  USA300TCH1516_ALE/1046247‑1046427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.