New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1046337153 (0.750)10 (0.050) 6/148 NT 6.6% coding (477/939 nt) menA 1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase
?USA300TCH1516_ALE = 1046354 143 (0.760)coding (460/939 nt) menA 1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase

Only 100 of 199 total aligned reads displayed.

TTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGA  >  USA300TCH1516_ALE/1046264‑1046444
                                                                                          |                                                                                          
ttACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAGATACGCCTGAGAATAATTCACCGaa                                                                                            >  1:144441/1‑91 (MQ=255)
ttACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGaa                                                                                            >  2:539622/1‑91 (MQ=255)
  aCATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAag                                                                                          >  2:2717644‑M2/1‑89 (MQ=255)
   cATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAagg                                                                                         >  1:1533033‑M2/1‑88 (MQ=255)
   cATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAagg                                                                                         >  2:1112125‑M2/1‑88 (MQ=255)
    aTAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggc                                                                                        <  1:2772198‑M2/91‑5 (MQ=255)
    aTAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggc                                                                                        <  1:2669368‑M2/91‑5 (MQ=255)
     tAACTTTTAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                                       >  2:3511780‑M2/1‑86 (MQ=255)
     tAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                                       <  1:2015013‑M2/91‑6 (MQ=255)
     tAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                                       >  1:2880643‑M2/1‑86 (MQ=255)
     tAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                                       >  2:2815002‑M2/1‑86 (MQ=255)
     tAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAaggcg                                                                                       <  1:787852‑M2/91‑6 (MQ=255)
       aCTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTc                                                                                     >  1:1641308/1‑91 (MQ=255)
       aCTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTc                                                                                     <  2:3463525/91‑1 (MQ=255)
        cTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTcc                                                                                    <  1:1674376/91‑1 (MQ=255)
        cTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTcc                                                                                    <  1:1196541/91‑1 (MQ=255)
         tttGATTATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCa                                                                                   <  2:3642046/91‑1 (MQ=255)
         tttGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCa                                                                                   <  2:2617577/91‑1 (MQ=255)
          ttGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCAt                                                                                  <  2:1790353/91‑1 (MQ=255)
            gAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGa                                                                                >  2:685963/1‑91 (MQ=255)
            gAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGa                                                                                >  1:1261433/1‑91 (MQ=255)
             aaTATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGaa                                                                               <  1:1728218/91‑1 (MQ=255)
              atatTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGaaa                                                                              <  1:3317686/91‑1 (MQ=255)
              atatTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATAAGCCTGAGAATAATTCACCGAAAGGCGTCCATGaaa                                                                              >  2:2558258/1‑91 (MQ=255)
               tatTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAAt                                                                             <  2:2817615/91‑1 (MQ=255)
               tatTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAAt                                                                             <  1:1497073/91‑1 (MQ=255)
               tatTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAAt                                                                             >  2:596389/1‑91 (MQ=255)
                atTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATa                                                                            >  1:3305773/1‑91 (MQ=255)
                 ttggcAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAg                                                                           <  1:3561969/87‑1 (MQ=255)
                 ttGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAg                                                                           <  1:708652/91‑1 (MQ=255)
                   gCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAggg                                                                         >  1:1555701/1‑91 (MQ=255)
                     cAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGaa                                                                       >  2:3885469/1‑91 (MQ=255)
                      aGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGaaa                                                                      >  2:1839392/1‑91 (MQ=255)
                       gTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAg                                                                     >  1:2444018/1‑91 (MQ=255)
                        tttGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGGCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAgg                                                                    <  2:3051896/91‑1 (MQ=255)
                        tttGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAgg                                                                    <  1:2126219/91‑1 (MQ=255)
                           gAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGcc                                                                 >  1:2642826/1‑91 (MQ=255)
                           gAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGcc                                                                 <  1:946471/91‑1 (MQ=255)
                           gAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGcc                                                                 >  2:734213/1‑91 (MQ=255)
                             aTAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCAc                                                               >  2:1011348/1‑91 (MQ=255)
                             aTAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCAc                                                               >  2:3304956/1‑91 (MQ=255)
                              tAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCAcc                                                              <  1:92371/91‑1 (MQ=255)
                              tAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCAcc                                                              <  2:2845633/91‑1 (MQ=255)
                                aaGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTg                                                            <  1:3438715/91‑1 (MQ=255)
                                aaGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTg                                                            <  2:2203189/91‑1 (MQ=255)
                                aaGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTg                                                            <  2:2364304/91‑1 (MQ=255)
                                    aTGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtata                                                        >  1:187107/1‑91 (MQ=255)
                                    aTGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtata                                                        >  2:2999287/1‑91 (MQ=255)
                                    aTGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtata                                                        <  2:3390850/91‑1 (MQ=255)
                                     tGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatat                                                       >  1:1521930/1‑91 (MQ=255)
                                     tGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatat                                                       >  1:2346925/1‑91 (MQ=255)
                                      gCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGtatata                                                      <  1:1113344/91‑1 (MQ=255)
                                       cAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAg                                                     >  1:1549302/1‑91 (MQ=255)
                                       cAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAg                                                     >  1:444165/1‑91 (MQ=255)
                                         aTAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGt                                                   <  2:1153350/91‑1 (MQ=255)
                                             cGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAAcc                                               >  1:3906441/1‑91 (MQ=255)
                                              gATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCa                                              <  1:3478734/91‑1 (MQ=255)
                                                taataaACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAAc                                            <  1:2466718/91‑1 (MQ=255)
                                                taataaACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAAc                                            <  1:3054078/91‑1 (MQ=255)
                                                      aCATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcat                                      >  2:2113565/1‑91 (MQ=255)
                                                       cATACGCATAAATACGCCTGAGAATCATTCACCGAAAGGTGTCCATGAAATAGAGAAAGGGCCACCTGTATATAGGTAACCAACAGCcata                                     <  1:3671939/91‑1 (MQ=255)
                                                       cATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcata                                     >  2:361645/1‑91 (MQ=255)
                                                       cATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcata                                     <  1:484311/91‑1 (MQ=255)
                                                       cATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcata                                     >  2:3825851/1‑91 (MQ=255)
                                                        aTACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcatac                                    >  2:3702597/1‑91 (MQ=255)
                                                        aTACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcatac                                    <  2:974546/91‑1 (MQ=255)
                                                        aTACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcatac                                    <  1:2266570/91‑1 (MQ=255)
                                                         tACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcataca                                   >  1:3453071/1‑91 (MQ=255)
                                                         tACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCcataca                                   <  2:311173/91‑1 (MQ=255)
                                                             cATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACt                               >  2:1609639/1‑91 (MQ=255)
                                                               tAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTaa                             >  1:2536831/1‑91 (MQ=255)
                                                                aaaTACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAAt                            <  2:917367/91‑1 (MQ=255)
                                                                aaaTACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAAt                            <  2:3754994/91‑1 (MQ=255)
                                                                aaaTACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAAt                            >  1:656502/1‑91 (MQ=255)
                                                                    gcGCCGGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCaa                        <  2:148186/90‑1 (MQ=255)
                                                                     cGCCTGAGAATAATTCACCGAAaggcgtatttatgggtatgtttattatcgttattgcattctctattcaaactggcaatatccaaagttc                       <  2:1776215‑M2/91‑70 (MQ=255)
                                                                     cGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAAc                       >  1:463466/1‑91 (MQ=255)
                                                                     cGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAAc                       >  2:3132290/1‑91 (MQ=255)
                                                                      gCCTGAGAATAATTCACCGAAaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttat                      <  1:1040217‑M2/91‑71 (MQ=255)
                                                                       ccTGAGAATAATTCACCGAAaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttatg                     <  2:2427494‑M2/91‑72 (MQ=255)
                                                                       ccTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTg                     >  1:2721976/1‑91 (MQ=255)
                                                                        cTGAGAATAATTCACCGAAaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttatgt                    <  2:3135520‑M2/91‑73 (MQ=255)
                                                                        cTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTgg                    >  1:379713/1‑91 (MQ=255)
                                                                          gagaATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGta                  >  1:152679/1‑91 (MQ=255)
                                                                           ggaATAATTCACCGAAAGGCGTCCATGACATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGtaa                 <  2:1695354/90‑1 (MQ=255)
                                                                           agaATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGtaa                 <  1:1992387/91‑1 (MQ=255)
                                                                           agaATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGtaa                 >  2:3228909/1‑91 (MQ=255)
                                                                            gaATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGtaat                <  1:20256/91‑1 (MQ=255)
                                                                               taatTCTCCGAAaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttatgtaatctgg             <  1:3069271‑M2/91‑80 (MQ=255)
                                                                               taatTCACCGAAaggcgtatttatgggtatgtttattatcgttattgcattctttattcaaactggcaatattcaaagttatgtaatttgg             <  1:2661976‑M2/91‑80 (MQ=255)
                                                                                aatTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAAcc            >  1:2228021/1‑91 (MQ=255)
                                                                                aatTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAAcc            <  1:3945599/91‑1 (MQ=255)
                                                                                 atTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCa           >  2:424550/1‑91 (MQ=255)
                                                                                    cACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCaaaa        >  1:392805/1‑91 (MQ=255)
                                                                                     aCCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAAt       >  1:2496370/1‑91 (MQ=255)
                                                                                       cGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGa     <  1:339709/91‑1 (MQ=255)
                                                                                        gAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGaa    >  2:1044825/1‑91 (MQ=255)
                                                                                         aaaGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAag   <  2:1317023/91‑1 (MQ=255)
                                                                                         aaaGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAag   <  1:3703159/91‑1 (MQ=255)
                                                                                          aaGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAaga  >  2:1945435/1‑91 (MQ=255)
                                                                                          |                                                                                          
TTACATAACTTTGAATATTGCCAGTTTGAATAAAGAATGCAATAACGATAATAAACATACCCATAAATACGCCTGAGAATAATTCACCGAAAGGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGA  >  USA300TCH1516_ALE/1046264‑1046444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.