BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1199293	163 (0.800)	18 (0.100)	7/144	NT	9.7%	intergenic (+20/‑63)	USA300HOU_RS05980/USA300HOU_RS05985	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1199312	189 (1.030)	18 (0.100)	7/144	NT	9.7%	intergenic (+39/‑44)	USA300HOU_RS05980/USA300HOU_RS05985	hypothetical protein/hypothetical protein

Only 100 of 285 total aligned reads displayed.

CCAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTA  >  USA300TCH1516_ALE/1199222‑1199402

ccAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTa                                                                                            <  2:982594/91‑1 (MQ=255)

actaccttaaaaaaattataaaataccatctattgcccttatattcagaaaaatgcatgtcaaaAACGAGGCAAGGGTACATGATACTTTa                                                                                            >  2:3883756‑M1/65‑91 (MQ=255)

  aaaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgc                                                                                          >  2:2816208‑M2/1‑89 (MQ=255)

  aaaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgc                                                                                          <  1:1195942‑M2/91‑3 (MQ=255)

   aaaaGTGTTACTCCAAATCTTTAACTGGATTTTACTTCAATTACAATAAATTAAGCGACATAACGAGGCTAGGGTACATGATACTGTAgcc                                                                                         <  2:775685‑M2/91‑4 (MQ=255)

   aaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         >  1:1573986‑M2/1‑88 (MQ=255)

   aaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         >  1:3605709‑M2/1‑88 (MQ=255)

    aaaGGGTTACTCCAAATCTTTAATGGGATTTTAATTCAATTACAATAAATTATGCGACATAACGAGGCAAGGGTACATGATACTTTAgcct                                                                                        >  2:2304795‑M2/1‑87 (MQ=255)

     aaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctc                                                                                       <  2:884238‑M2/91‑6 (MQ=255)

     aaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctc                                                                                       <  1:2166169‑M2/91‑6 (MQ=255)

       gggTTACTCCAAGTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgt                                                                                     <  1:3032682‑M2/91‑8 (MQ=255)

       gggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgt                                                                                     <  1:640901‑M2/91‑8 (MQ=255)

       gggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgt                                                                                     <  2:1571236‑M2/91‑8 (MQ=255)

         gTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAACTTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGttt                                                                                   >  2:3302712/1‑91 (MQ=255)

          ttACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGtttt                                                                                  >  2:1395116/1‑91 (MQ=255)

            aCTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTg                                                                                >  1:2083228/1‑91 (MQ=255)

             cTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGa                                                                               >  1:3651690/1‑91 (MQ=255)

               ccAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGata                                                                             >  2:3584845/1‑91 (MQ=255)

                cAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGatat                                                                            <  2:1945556/91‑1 (MQ=255)

                 aaaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAGGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATg                                                                           <  1:677967/91‑1 (MQ=255)

                 aaaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATg                                                                           >  1:427929/1‑91 (MQ=255)

                 aaaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATg                                                                           <  2:2880123/91‑1 (MQ=255)

                  aaTCTTTAATTGGATTTTAATTCAATTACAATAACTTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGc                                                                          <  2:3943580/91‑1 (MQ=255)

                  aaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGc                                                                          <  1:251640/91‑1 (MQ=255)

                  aaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGc                                                                          >  2:2977621/1‑91 (MQ=255)

                    tCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAt                                                                        <  1:2688614/91‑1 (MQ=255)

                       ttAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtttt                                                                     <  2:3101188/91‑1 (MQ=255)

                       ttAATTGGAGTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATAAGCAtttt                                                                     >  1:1973326/1‑91 (MQ=255)

                        tAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAttttt                                                                    >  2:2660105/1‑91 (MQ=255)

                        tAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATACAttttt                                                                    >  2:3516303/1‑91 (MQ=255)

                         aaTTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTc                                                                   <  2:2720818/91‑1 (MQ=255)

                          aTTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCt                                                                  <  1:1849650/91‑1 (MQ=255)

                          aTTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCt                                                                  <  1:9585/91‑1 (MQ=255)

                          aTTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCt                                                                  >  1:519716/1‑91 (MQ=255)

                               aTTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAata                                                             <  2:2905933/91‑1 (MQ=255)

                                 tttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAAtata                                                           <  2:3058919/91‑1 (MQ=255)

                                  ttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATaa                                                          >  2:1161981/1‑91 (MQ=255)

                                  ttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATaa                                                          <  1:1539627/91‑1 (MQ=255)

                                   tAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAg                                                         <  1:2872812/91‑1 (MQ=255)

                                    aaTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAgg                                                        >  1:1146010/1‑91 (MQ=255)

                                    aaTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAgg                                                        <  2:3859265/91‑1 (MQ=255)

                                     aTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAggg                                                       <  1:3918431/91‑1 (MQ=255)

                                     aTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAggg                                                       <  1:3400420/91‑1 (MQ=255)

                                      ttCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGc                                                      >  1:932111/1‑91 (MQ=255)

                                       tCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCa                                                     >  2:1974942/1‑91 (MQ=255)

                                          aTTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATa                                                  <  2:2466019/91‑1 (MQ=255)

                                            tACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGa                                                >  1:3455554/1‑91 (MQ=255)

                                            tACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGa                                                <  1:2892045/91‑1 (MQ=255)

                                             aCAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGGATATAAGGGCAATAGAt                                               <  2:2094227/91‑1 (MQ=255)

                                             aCAATAAATTAAGCGACAGAACGAGGCAAGGGTACATGGTACTTCAGCCTCGTTTTTGAGATGCATTTGTCTGAAGATAAGGGCAATAGAt                                               <  2:2871109/91‑1 (MQ=255)

                                               aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             <  2:3302471/91‑1 (MQ=255)

                                               aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             <  2:554828/91‑1 (MQ=255)

                                                aTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGt                                            >  2:2517106/1‑91 (MQ=255)

                                                    aTTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAttt                                        >  1:548296/1‑91 (MQ=255)

                                                     ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  2:3720846/91‑1 (MQ=255)

                                                     ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:1784551/91‑1 (MQ=255)

                                                      tAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTta                                      <  2:3138392/91‑1 (MQ=255)

                                                       aaGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTtat                                     >  2:3263643/1‑91 (MQ=255)

                                                        aGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTtata                                    <  1:1681505/91‑1 (MQ=255)

                                                        aGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTtata                                    >  2:2549230/1‑91 (MQ=255)

                                                          cGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAt                                  <  2:2147137/91‑1 (MQ=255)

                                                          cGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAt                                  <  1:3832703/91‑1 (MQ=255)

                                                           gACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAtt                                 <  2:3404979/91‑1 (MQ=255)

                                                           gACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAtt                                 <  1:1349183/91‑1 (MQ=255)

                                                              aTAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAttttt                              >  2:2427714/1‑91 (MQ=255)

                                                              aTAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAttttt                              >  1:128925/1‑91 (MQ=255)

                                                              aTAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAttttt                              <  1:1543351/91‑1 (MQ=255)

                                                                     GGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGt                       <  1:1118422‑M1/91‑1 (MQ=255)

                                                                      gCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggcgtaacccttttt                      <  2:483269‑M2/91‑71 (MQ=255)

                                                                      gCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaacccttttt                      <  1:2360701‑M2/91‑71 (MQ=255)

                                                                      gCAAGGGTACATCATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctattt                      <  1:3056911‑M2/91‑71 (MQ=255)

                                                                       gaaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAg                     <  2:1426636/90‑1 (MQ=255)

                                                                        aaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGt                    <  2:540792/91‑1 (MQ=255)

                                                                        aaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGt                    >  1:2944063/1‑91 (MQ=255)

                                                                        aaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGt                    >  1:1643886/1‑91 (MQ=255)

                                                                         aGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttttgga                   <  1:3702320‑M2/91‑74 (MQ=255)

                                                                         aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTCTTTTATAATTTTTTTAAGGTAGTg                   >  2:624038/1‑91 (MQ=255)

                                                                         aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   >  2:440558/1‑91 (MQ=255)

                                                                         aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGAAGGTATTTTATAATTTTTTTAAGGTAGTg                   >  2:1305065/1‑91 (MQ=255)

                                                                           ggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAt                 <  1:3772167/91‑1 (MQ=255)

                                                                           ggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAt                 >  1:1906853/1‑91 (MQ=255)

                                                                            gTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAtt                <  1:3313546/91‑1 (MQ=255)

                                                                            gTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAtt                >  1:239604/1‑91 (MQ=255)

                                                                             tACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTa               <  2:372979/91‑1 (MQ=255)

                                                                              aCATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTaa              >  2:2227403/1‑91 (MQ=255)

                                                                              aCATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTaa              <  1:2816791/91‑1 (MQ=255)

                                                                              aCATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTGAAGGTAGTGATTaa              <  2:171913/91‑1 (MQ=255)

                                                                                aTGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACa            >  2:3223477/1‑91 (MQ=255)

                                                                                aTGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACa            <  1:1057673/91‑1 (MQ=255)

                                                                                aTGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACa            <  2:1358339/91‑1 (MQ=255)

                                                                                 tGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACAt           <  2:3702025/91‑1 (MQ=255)

                                                                                  gatgcTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATa          <  1:3113211/87‑1 (MQ=255)

                                                                                  gATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATa          >  1:2218351/1‑91 (MQ=255)

                                                                                   aTACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAg         <  2:2589548/91‑1 (MQ=255)

                                                                                   aTACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAg         <  1:694919/91‑1 (MQ=255)

                                                                                    tACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGa        <  1:715716/91‑1 (MQ=255)

                                                                                    tACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGa        >  2:732168/1‑91 (MQ=255)

                                                                                     aCTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGat       >  1:1925361/1‑91 (MQ=255)

                                                                                      cTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGata      >  1:2724255/1‑91 (MQ=255)

                                                                                       tttAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGatat     <  1:2563876/91‑1 (MQ=255)

CCAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTA  >  USA300TCH1516_ALE/1199222‑1199402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.