New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1255979165 (0.810)27 (0.160) 12/134 NT 15.5% intergenic (+195/+49) rplS/USA300HOU_RS06250 50S ribosomal protein L19/hypothetical protein
?USA300TCH1516_ALE = 1255992 157 (0.920)intergenic (+208/+36) rplS/USA300HOU_RS06250 50S ribosomal protein L19/hypothetical protein

Only 100 of 239 total aligned reads displayed.

GATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATA  >  USA300TCH1516_ALE/1255902‑1256082
                                                                                          |                                                                                          
gATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAgg                                                                                            >  1:3476811/1‑91 (MQ=255)
 aTAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGa                                                                                           <  2:1798326‑M2/91‑2 (MQ=255)
 aTAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGa                                                                                           <  1:3785804‑M2/91‑2 (MQ=255)
   aaTGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGact                                                                                         <  1:331790‑M2/91‑4 (MQ=255)
   aaTGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGact                                                                                         <  2:2663016‑M2/91‑4 (MQ=255)
    aTGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGactt                                                                                        >  2:3757432‑M2/1‑87 (MQ=255)
     tGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGactta                                                                                       >  2:3250600‑M2/1‑86 (MQ=255)
     tGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGactta                                                                                       <  1:1720461‑M2/91‑6 (MQ=255)
      gTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttag                                                                                      <  2:2194717‑M2/91‑7 (MQ=255)
      gTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttag                                                                                      >  2:1557245‑M2/1‑85 (MQ=255)
      gTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttag                                                                                      <  1:1486365‑M2/91‑7 (MQ=255)
       tAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttagt                                                                                     >  2:1627219‑M2/1‑84 (MQ=255)
          ttGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttagtaga                                                                                  >  2:1314744‑M2/1‑81 (MQ=255)
             tttATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttagtagattt                                                                               <  2:2912199‑M2/91‑14 (MQ=255)
             tttATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGacttagtagattt                                                                               >  2:3721876‑M2/1‑78 (MQ=255)
               tATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATttat                                                                             >  1:1965094/1‑91 (MQ=255)
               tATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATttat                                                                             <  2:3570404/91‑1 (MQ=255)
                aTTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATttatt                                                                            >  1:678977/1‑91 (MQ=255)
                 ttCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATttatta                                                                           >  2:1721630/1‑91 (MQ=255)
                 ttCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATttatta                                                                           >  2:751399/1‑91 (MQ=255)
                   ccTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTaaa                                                                         <  1:33621/91‑1 (MQ=255)
                   ccTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTaaa                                                                         <  1:1763487/91‑1 (MQ=255)
                    cTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAat                                                                        <  2:1145315/91‑1 (MQ=255)
                      tctcTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAatat                                                                      >  2:3160548/1‑91 (MQ=255)
                        tctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAatatat                                                                    >  1:815278/1‑91 (MQ=255)
                        tctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAatatat                                                                    <  2:3344262/91‑1 (MQ=255)
                         ctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATg                                                                   <  2:1754269/91‑1 (MQ=255)
                            ttCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGt                                                                >  2:381999/1‑91 (MQ=255)
                             tCATAACGTGTTTGCTCAAAATGGTTATATACACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAATAGATTTATTACATATATGCGTa                                                               >  2:3015230/1‑91 (MQ=255)
                             tCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTa                                                               >  1:2107877/1‑91 (MQ=255)
                               aTAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGc                                                             >  1:3093054/1‑91 (MQ=255)
                                    gtgtTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACat                                                        >  1:2345390/1‑91 (MQ=255)
                                       tttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACattat                                                     >  1:1102198/1‑91 (MQ=255)
                                        ttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACattatt                                                    >  2:274141/1‑91 (MQ=255)
                                        ttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACattatt                                                    <  1:3232584/91‑1 (MQ=255)
                                        ttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACattatt                                                    <  2:1667285/91‑1 (MQ=255)
                                        ttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACattatt                                                    >  1:214413/1‑91 (MQ=255)
                                        ttGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACattatt                                                    >  2:570581/1‑91 (MQ=255)
                                         tGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTAttt                                                   >  1:3071320/1‑91 (MQ=255)
                                         tGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTAttt                                                   <  2:3215898/91‑1 (MQ=255)
                                             cAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGt                                               >  2:905382/1‑91 (MQ=255)
                                                aaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCtt                                            >  2:622317/1‑91 (MQ=255)
                                                aaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCtt                                            >  1:2554025/1‑91 (MQ=255)
                                                 aTGGTTATATAAACAAGAATCTACTAAGTGCCATTGAAAAGGACTTAGGAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTg                                           <  2:888549/91‑1 (MQ=255)
                                                 aTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTg                                           >  2:1485988/1‑91 (MQ=255)
                                                  tGGTTCTATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGc                                          <  2:3642595/91‑1 (MQ=255)
                                                  tGGCTATATAAACAAAAATCTACTAGGAGCCACTGAAAAGGACTTAGTAGATTTATGAAATATCTTCGTCGCAACATTATTTTTGCGTTGc                                          >  2:1924311/1‑91 (MQ=255)
                                                     ttATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCa                                       <  2:1136138/91‑1 (MQ=255)
                                                     ttATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCa                                       >  1:3250269/1‑91 (MQ=255)
                                                      tatataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAt                                      <  1:1165112/91‑1 (MQ=255)
                                                       atataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtc                                     >  2:3906641/1‑91 (MQ=255)
                                                        tataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtct                                    <  1:1610955/91‑1 (MQ=255)
                                                        tataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtct                                    <  1:3518951/91‑1 (MQ=255)
                                                        tataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtct                                    >  2:2023343/1‑91 (MQ=255)
                                                            taCAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTg                                >  1:2619905/2‑91 (MQ=255)
                                                            aaCAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTg                                <  2:3408870/91‑1 (MQ=255)
                                                            aaCAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTg                                <  2:1165758/91‑1 (MQ=255)
                                                             aCAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGa                               >  2:1209828/1‑91 (MQ=255)
                                                              aataaaTCTACTAAGTCCTTTTCAATGGTACTTATTAGATTTATTAAATATATGCGTAGCAACTTTATTTTTGTCTTGCCCATCTCGTGaa                              >  1:1319603/4‑91 (MQ=18)
                                                               aaaaaTCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGaaa                             <  2:251281/91‑1 (MQ=255)
                                                                aaaaTCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGaaaa                            >  1:79307/1‑91 (MQ=255)
                                                                aaaaTCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGaaaa                            >  1:3619169/1‑91 (MQ=255)
                                                                aaaaGCTACGAAGTGCCATTGAAAGGGACTTAGGAGATTTAGTAAATATATGCGTAGCAACATTATGTTTGTCTTGCCCAGCTCGTGaaaa                            <  2:3308303/91‑1 (MQ=255)
                                                                 aaaTCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaat                           <  1:408829/91‑1 (MQ=255)
                                                                 aaaTCTACTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaat                           >  1:1671985/1‑91 (MQ=21)
                                                                  aaTCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaata                          >  1:1008613/1‑91 (MQ=255)
                                                                     ctactaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAataata                       >  1:3880013/1‑91 (MQ=255)
                                                                      tactaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaatt                      <  1:1268014‑M2/91‑71 (MQ=255)
                                                                      tactaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtac                      <  2:369325/91‑1 (MQ=255)
                                                                       actaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtact                     >  1:913776/1‑91 (MQ=255)
                                                                       actaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtact                     >  1:1434348/1‑91 (MQ=255)
                                                                       actaAGTGCCATTGAAAAAGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaatta                     <  1:1750863‑M2/91‑72 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattgc                    <  2:2324501‑M2/91‑73 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattac                    <  1:1853397‑M2/91‑73 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattac                    <  1:517188‑M2/91‑73 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattac                    <  1:1986565‑M2/91‑73 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattac                    <  2:2078797‑M2/91‑73 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattac                    <  2:3486393‑M2/91‑73 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                    >  2:74805/1‑91 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                    <  2:278723/91‑1 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                    >  1:1507928/1‑91 (MQ=255)
                                                                        ctaAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                    >  2:710998/1‑91 (MQ=255)
                                                                         tcagtGCCATTGAAAAGGccttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggcataaacacttaca                   <  2:44281‑M2/89‑74 (MQ=255)
                                                                         taAGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattaca                   <  1:2827370‑M2/91‑74 (MQ=255)
                                                                          aaGTGCCATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacat                  <  2:1276054‑M2/91‑75 (MQ=255)
                                                                            gTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACata                <  1:3414072/91‑1 (MQ=255)
                                                                             tGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACatat               <  2:599504/91‑1 (MQ=255)
                                                                               ccATTGAAAAGGacttagtagatttttgtttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatca             <  2:2558109‑M2/91‑80 (MQ=255)
                                                                                cATTGAAAAGGacttagtagatttttttttatataaccattttgagcaaacacgttatgaatagagaaggaataaacaattacattatcaa            <  2:1471990‑M2/91‑81 (MQ=255)
                                                                                 agtGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg           <  2:3960228/89‑1 (MQ=255)
                                                                                 aTTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg           >  2:1794505/1‑91 (MQ=255)
                                                                                 aTTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg           <  1:3050794/91‑1 (MQ=255)
                                                                                  ttGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGc          <  2:245593/91‑1 (MQ=255)
                                                                                   tGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGcc         <  1:2663016/91‑1 (MQ=255)
                                                                                    gAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCa        >  2:1705455/1‑91 (MQ=255)
                                                                                      aaaGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCaaa      <  1:3773681/91‑1 (MQ=255)
                                                                                        aGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAata    <  1:1240164/91‑1 (MQ=255)
                                                                                        aGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAata    >  1:1023534/1‑91 (MQ=255)
                                                                                          gACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAAtata  >  2:2446397/1‑91 (MQ=255)
                                                                                          gACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAAtata  >  2:1201187/1‑91 (MQ=255)
                                                                                          |                                                                                          
GATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATA  >  USA300TCH1516_ALE/1255902‑1256082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.