New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1332949116 (0.570)11 (0.070) 8/124 NT 9.6% intergenic (+159/+63) hfq/bsaA_1 RNA‑binding protein Hfq/Glutathione peroxidase BsaA
?USA300TCH1516_ALE = 1332971 117 (0.740)intergenic (+181/+41) hfq/bsaA_1 RNA‑binding protein Hfq/Glutathione peroxidase BsaA

Only 100 of 258 total aligned reads displayed.

CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG  >  USA300TCH1516_ALE/1332881‑1333061
                                                                                          |                                                                                          
 aaTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAc                                                                                           <  2:1479771‑M2/91‑2 (MQ=255)
   aaagagaaatagaaaaattattataaaatatactagctcatagcaaatAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACtt                                                                                         >  1:2428486‑M1/49‑91 (MQ=255)
   aaagagaaatagaaaaattattataaaatatactagctcatagcaaagAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACtt                                                                                         >  2:1558711‑M1/49‑91 (MQ=255)
     aaaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActtta                                                                                       >  1:429015‑M2/1‑86 (MQ=255)
      aaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGCTACGActttat                                                                                      <  1:3587839‑M2/91‑7 (MQ=255)
       atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTTATATAAAGGTCGAGTCAATATATGATACGActttata                                                                                     <  1:2630307‑M2/91‑8 (MQ=255)
       atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata                                                                                     >  1:2432941‑M2/1‑84 (MQ=255)
       atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata                                                                                     <  1:1035711‑M2/91‑8 (MQ=255)
       agaaatagaaaaattattataaaatatactagctcatagcaaatAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTtata                                                                                     >  2:491849‑M1/45‑91 (MQ=255)
        tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat                                                                                    <  2:2143245‑M2/91‑9 (MQ=255)
        tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat                                                                                    <  1:552613‑M2/91‑9 (MQ=255)
         gatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatg                                                                                   >  1:1222984‑M2/1‑82 (MQ=255)
          atgTTCAAATGACAAGATACCATAACGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga                                                                                  >  2:1405209‑M2/1‑81 (MQ=255)
          atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga                                                                                  <  2:1293631‑M2/91‑11 (MQ=255)
          atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga                                                                                  <  1:116508‑M2/91‑11 (MQ=255)
          atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga                                                                                  <  2:387683‑M2/91‑11 (MQ=255)
           tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                 >  2:2250716‑M2/1‑80 (MQ=255)
           tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                 >  1:3816634‑M2/1‑80 (MQ=255)
              tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAGCGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcg                                                                              >  1:2590237‑M2/1‑77 (MQ=255)
              tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcg                                                                              >  2:3785120‑M2/1‑77 (MQ=255)
               cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt                                                                             >  1:1765692‑M2/1‑76 (MQ=255)
               cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt                                                                             <  1:1725162‑M2/91‑16 (MQ=255)
               cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACAActttatatgaagaga                                                                             >  2:1213419‑M2/1‑76 (MQ=255)
                 aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgttc                                                                           >  2:292851‑M2/1‑74 (MQ=255)
                  aTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttt                                                                          >  2:1940304‑M2/1‑73 (MQ=255)
                  aTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttt                                                                          >  2:1940851‑M2/1‑73 (MQ=255)
                     aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt                                                                       <  2:2485295/91‑1 (MQ=255)
                     aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCGTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt                                                                       <  1:2274085/91‑1 (MQ=255)
                         gATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCt                                                                   <  2:2221044/91‑1 (MQ=255)
                          aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa                                                                  >  2:2379698/1‑91 (MQ=255)
                          aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa                                                                  <  1:111966/91‑1 (MQ=255)
                            aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg                                                                >  2:1526231/1‑91 (MQ=255)
                            aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg                                                                >  1:47365/1‑91 (MQ=255)
                             cAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGa                                                               >  2:2206283/1‑91 (MQ=255)
                                tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                            <  1:3495233/91‑1 (MQ=255)
                                tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                            <  1:1132606/91‑1 (MQ=255)
                                 agagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTa                                                           <  2:1522134/91‑1 (MQ=255)
                                  gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg                                                          >  2:3859458/1‑91 (MQ=255)
                                  gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg                                                          <  1:2750920/91‑1 (MQ=255)
                                    ggAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGta                                                        >  2:3585421/1‑91 (MQ=255)
                                     gAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtat                                                       >  1:3012023/1‑91 (MQ=255)
                                           ttGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTta                                                 <  2:430194/91‑1 (MQ=255)
                                            tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                <  1:1994807/91‑1 (MQ=255)
                                            tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                <  2:2057710/91‑1 (MQ=255)
                                            tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                >  2:2782579/1‑91 (MQ=255)
                                            tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                >  1:1144535/1‑91 (MQ=255)
                                             gTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata                                               <  2:1319864/91‑1 (MQ=255)
                                              taataaAAACGCTTCATATAAAGGTCGCGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              >  2:2737328/1‑91 (MQ=255)
                                              taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              >  1:154983/1‑91 (MQ=255)
                                              taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              <  1:136222/91‑1 (MQ=255)
                                              taataaAAACGCTTCATATAAAGGTCGAGTCAATATACGATACGACCTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              >  1:3152344/1‑91 (MQ=255)
                                               aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                                             <  2:3713366/91‑1 (MQ=255)
                                                 taaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTAtaataa                                           <  1:1950291/91‑1 (MQ=255)
                                                 taaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTAtaataa                                           <  1:2888855/91‑1 (MQ=255)
                                                 taaAAACGCTACAAATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGATTTATTTGCTATGAGCTAGTATATTTTAtaataa                                           <  2:104004/91‑1 (MQ=255)
                                                   aaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGAcctttatatgaagcgtttttattacaaacattcctctattgtatcttgtca                                         <  1:2459741‑M2/91‑52 (MQ=255)
                                                   AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         <  1:792825‑M1/91‑1 (MQ=255)
                                                   AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         >  2:1733182‑M1/1‑91 (MQ=255)
                                                   AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         <  1:1186633‑M1/91‑1 (MQ=255)
                                                    AAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttt                                        <  2:3881900‑M1/91‑1 (MQ=255)
                                                      ACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttttt                                      >  2:3765006‑M1/1‑91 (MQ=255)
                                                        GCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCt                                    <  2:2389211‑M1/91‑1 (MQ=255)
                                                          TTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  <  1:1389988‑M1/91‑1 (MQ=255)
                                                          TTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  2:260785‑M1/1‑91 (MQ=255)
                                                          TTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  <  2:2876245‑M1/91‑1 (MQ=255)
                                                           TCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt                                 <  2:3639415‑M1/91‑1 (MQ=255)
                                                           TCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt                                 <  2:884177‑M1/91‑1 (MQ=255)
                                                           TCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt                                 <  1:3727770‑M1/91‑1 (MQ=255)
                                                            cATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatc                                <  1:846099‑M2/91‑61 (MQ=255)
                                                              TATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtct                              <  2:2219098‑M1/91‑1 (MQ=255)
                                                                taAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattt                            <  2:2828251‑M2/91‑65 (MQ=255)
                                                                TAAAGGTCGAGTCAATATATGATACTACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct                            >  1:3668477‑M1/1‑91 (MQ=255)
                                                                TAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct                            >  2:1174586‑M1/1‑91 (MQ=255)
                                                                TAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct                            >  1:1442246‑M1/1‑91 (MQ=255)
                                                                 aaaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattta                           <  2:621910‑M2/91‑66 (MQ=255)
                                                                  aaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaa                          <  1:405063‑M2/91‑67 (MQ=255)
                                                                  AAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCttt                          <  2:538084‑M1/91‑1 (MQ=255)
                                                                   aGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat                         <  1:2722701‑M2/91‑68 (MQ=255)
                                                                   AGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc                         >  1:3825695‑M1/1‑91 (MQ=255)
                                                                   AGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc                         >  1:145872‑M1/1‑91 (MQ=255)
                                                                   AGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc                         <  1:1417103‑M1/91‑1 (MQ=255)
                                                                       cGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAtt                     <  2:2966544/91‑1 (MQ=255)
                                                                       cGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAtt                     >  2:2734556/1‑91 (MQ=255)
                                                                        gAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAttt                    >  2:2990629/1‑91 (MQ=255)
                                                                          gTCACTATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGa                  >  1:160412/1‑91 (MQ=255)
                                                                          gTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTCGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGa                  >  2:3466063/1‑91 (MQ=255)
                                                                           tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGaa                 >  2:3650924/1‑91 (MQ=255)
                                                                           tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCCATTTCTCTTTCGATTTGaa                 >  2:719110/1‑91 (MQ=255)
                                                                            cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc                <  1:444737/91‑1 (MQ=255)
                                                                            cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc                <  1:909415/91‑1 (MQ=255)
                                                                            cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc                <  2:1661200/91‑1 (MQ=255)
                                                                              atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATGTTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg              <  2:3248485/91‑1 (MQ=255)
                                                                              atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg              >  2:1095953/1‑91 (MQ=255)
                                                                                  atGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttt          >  1:2208702/1‑91 (MQ=255)
                                                                                   tGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttt         >  1:2190454/1‑91 (MQ=255)
                                                                                    gATACGACTTTATATGGAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttttt        <  2:3039672/91‑1 (MQ=255)
                                                                                     aTACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttt       <  1:2234689/91‑1 (MQ=255)
                                                                                      tACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTGCTATTTCTCTTTCGCTTTGAACAGGttttttt      >  1:3381449/1‑91 (MQ=255)
                                                                                       aCGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttttt     >  2:77095/1‑91 (MQ=255)
                                                                                          aCTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAg  >  1:2364248/1‑91 (MQ=255)
                                                                                          |                                                                                          
CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG  >  USA300TCH1516_ALE/1332881‑1333061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.