New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 1332949 | 116 (0.570) | 11 (0.070) | 8/124 | NT | 9.6% | intergenic (+159/+63) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA |
? | USA300TCH1516_ALE | = 1332971 | 117 (0.740) | intergenic (+181/+41) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA |
Only 100 of 258 total aligned reads displayed.
CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG > USA300TCH1516_ALE/1332881‑1333061 | aaTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAc < 2:1479771‑M2/91‑2 (MQ=255) aaagagaaatagaaaaattattataaaatatactagctcatagcaaatAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACtt > 1:2428486‑M1/49‑91 (MQ=255) aaagagaaatagaaaaattattataaaatatactagctcatagcaaagAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACtt > 2:1558711‑M1/49‑91 (MQ=255) aaaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActtta > 1:429015‑M2/1‑86 (MQ=255) aaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGCTACGActttat < 1:3587839‑M2/91‑7 (MQ=255) atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTTATATAAAGGTCGAGTCAATATATGATACGActttata < 1:2630307‑M2/91‑8 (MQ=255) atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata > 1:2432941‑M2/1‑84 (MQ=255) atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata < 1:1035711‑M2/91‑8 (MQ=255) agaaatagaaaaattattataaaatatactagctcatagcaaatAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTtata > 2:491849‑M1/45‑91 (MQ=255) tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat < 2:2143245‑M2/91‑9 (MQ=255) tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat < 1:552613‑M2/91‑9 (MQ=255) gatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatg > 1:1222984‑M2/1‑82 (MQ=255) atgTTCAAATGACAAGATACCATAACGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga > 2:1405209‑M2/1‑81 (MQ=255) atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga < 2:1293631‑M2/91‑11 (MQ=255) atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga < 1:116508‑M2/91‑11 (MQ=255) atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga < 2:387683‑M2/91‑11 (MQ=255) tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa > 2:2250716‑M2/1‑80 (MQ=255) tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa > 1:3816634‑M2/1‑80 (MQ=255) tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAGCGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcg > 1:2590237‑M2/1‑77 (MQ=255) tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcg > 2:3785120‑M2/1‑77 (MQ=255) cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt > 1:1765692‑M2/1‑76 (MQ=255) cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt < 1:1725162‑M2/91‑16 (MQ=255) cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACAActttatatgaagaga > 2:1213419‑M2/1‑76 (MQ=255) aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgttc > 2:292851‑M2/1‑74 (MQ=255) aTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttt > 2:1940304‑M2/1‑73 (MQ=255) aTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttt > 2:1940851‑M2/1‑73 (MQ=255) aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt < 2:2485295/91‑1 (MQ=255) aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCGTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt < 1:2274085/91‑1 (MQ=255) gATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCt < 2:2221044/91‑1 (MQ=255) aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa > 2:2379698/1‑91 (MQ=255) aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa < 1:111966/91‑1 (MQ=255) aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg > 2:1526231/1‑91 (MQ=255) aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg > 1:47365/1‑91 (MQ=255) cAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGa > 2:2206283/1‑91 (MQ=255) tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt < 1:3495233/91‑1 (MQ=255) tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt < 1:1132606/91‑1 (MQ=255) agagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTa < 2:1522134/91‑1 (MQ=255) gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg > 2:3859458/1‑91 (MQ=255) gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg < 1:2750920/91‑1 (MQ=255) ggAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGta > 2:3585421/1‑91 (MQ=255) gAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtat > 1:3012023/1‑91 (MQ=255) ttGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTta < 2:430194/91‑1 (MQ=255) tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat < 1:1994807/91‑1 (MQ=255) tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat < 2:2057710/91‑1 (MQ=255) tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat > 2:2782579/1‑91 (MQ=255) tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat > 1:1144535/1‑91 (MQ=255) gTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata < 2:1319864/91‑1 (MQ=255) taataaAAACGCTTCATATAAAGGTCGCGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa > 2:2737328/1‑91 (MQ=255) taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa > 1:154983/1‑91 (MQ=255) taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa < 1:136222/91‑1 (MQ=255) taataaAAACGCTTCATATAAAGGTCGAGTCAATATACGATACGACCTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa > 1:3152344/1‑91 (MQ=255) aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat < 2:3713366/91‑1 (MQ=255) taaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTAtaataa < 1:1950291/91‑1 (MQ=255) taaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTAtaataa < 1:2888855/91‑1 (MQ=255) taaAAACGCTACAAATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGATTTATTTGCTATGAGCTAGTATATTTTAtaataa < 2:104004/91‑1 (MQ=255) aaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGAcctttatatgaagcgtttttattacaaacattcctctattgtatcttgtca < 1:2459741‑M2/91‑52 (MQ=255) AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt < 1:792825‑M1/91‑1 (MQ=255) AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt > 2:1733182‑M1/1‑91 (MQ=255) AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt < 1:1186633‑M1/91‑1 (MQ=255) AAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttt < 2:3881900‑M1/91‑1 (MQ=255) ACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttttt > 2:3765006‑M1/1‑91 (MQ=255) GCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCt < 2:2389211‑M1/91‑1 (MQ=255) TTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt < 1:1389988‑M1/91‑1 (MQ=255) TTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt > 2:260785‑M1/1‑91 (MQ=255) TTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt < 2:2876245‑M1/91‑1 (MQ=255) TCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt < 2:3639415‑M1/91‑1 (MQ=255) TCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt < 2:884177‑M1/91‑1 (MQ=255) TCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt < 1:3727770‑M1/91‑1 (MQ=255) cATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatc < 1:846099‑M2/91‑61 (MQ=255) TATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtct < 2:2219098‑M1/91‑1 (MQ=255) taAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattt < 2:2828251‑M2/91‑65 (MQ=255) TAAAGGTCGAGTCAATATATGATACTACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct > 1:3668477‑M1/1‑91 (MQ=255) TAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct > 2:1174586‑M1/1‑91 (MQ=255) TAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct > 1:1442246‑M1/1‑91 (MQ=255) aaaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattta < 2:621910‑M2/91‑66 (MQ=255) aaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaa < 1:405063‑M2/91‑67 (MQ=255) AAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCttt < 2:538084‑M1/91‑1 (MQ=255) aGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat < 1:2722701‑M2/91‑68 (MQ=255) AGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc > 1:3825695‑M1/1‑91 (MQ=255) AGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc > 1:145872‑M1/1‑91 (MQ=255) AGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc < 1:1417103‑M1/91‑1 (MQ=255) cGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAtt < 2:2966544/91‑1 (MQ=255) cGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAtt > 2:2734556/1‑91 (MQ=255) gAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAttt > 2:2990629/1‑91 (MQ=255) gTCACTATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGa > 1:160412/1‑91 (MQ=255) gTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTCGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGa > 2:3466063/1‑91 (MQ=255) tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGaa > 2:3650924/1‑91 (MQ=255) tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCCATTTCTCTTTCGATTTGaa > 2:719110/1‑91 (MQ=255) cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc < 1:444737/91‑1 (MQ=255) cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc < 1:909415/91‑1 (MQ=255) cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc < 2:1661200/91‑1 (MQ=255) atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATGTTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg < 2:3248485/91‑1 (MQ=255) atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg > 2:1095953/1‑91 (MQ=255) atGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttt > 1:2208702/1‑91 (MQ=255) tGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttt > 1:2190454/1‑91 (MQ=255) gATACGACTTTATATGGAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttttt < 2:3039672/91‑1 (MQ=255) aTACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttt < 1:2234689/91‑1 (MQ=255) tACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTGCTATTTCTCTTTCGCTTTGAACAGGttttttt > 1:3381449/1‑91 (MQ=255) aCGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttttt > 2:77095/1‑91 (MQ=255) aCTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAg > 1:2364248/1‑91 (MQ=255) | CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG > USA300TCH1516_ALE/1332881‑1333061 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |