BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1417767 =	194 (0.950)	9 (0.050)	5/136	NT	5.9%	coding (152/831 nt)	gsiD_3	Glutathione transport system permease protein GsiD
*	?	USA300TCH1516_ALE	1417824 =	121 (0.700)	9 (0.050)	5/136	NT	5.9%	coding (95/831 nt)	gsiD_3	Glutathione transport system permease protein GsiD

Only 100 of 217 total aligned reads displayed.

AATAAATCTCTCCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTAT  >  USA300TCH1516_ALE/1417734‑1417914

 ataaatCTCTCCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTc                                                                                           <  1:958056/91‑1 (MQ=255)

    aatCTCTCCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCact                                                                                        <  1:2207867/91‑1 (MQ=255)

    aatCTCTCCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCact                                                                                        <  1:137556/91‑1 (MQ=255)

    aatCTCTCCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCact                                                                                        <  1:1101892/91‑1 (MQ=255)

       ctctcCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCactact                                                                                     >  2:70449/1‑91 (MQ=255)

       ctctcCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCactact                                                                                     >  1:3930430/1‑91 (MQ=255)

       ctctcCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCactact                                                                                     >  1:583215/1‑91 (MQ=255)

        tctcCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTg                                                                                    >  1:2603062/1‑91 (MQ=255)

         ctcCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGa                                                                                   >  1:2100020/1‑91 (MQ=255)

            ccATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACaa                                                                                <  1:3568121/91‑1 (MQ=255)

              aTAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAg                                                                              >  1:327517/1‑91 (MQ=255)

              aTAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAg                                                                              <  1:1872592/91‑1 (MQ=255)

               tAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGa                                                                             <  1:3877529/91‑1 (MQ=255)

               tAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGa                                                                             <  2:2211886/91‑1 (MQ=255)

               tAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGa                                                                             <  2:1236554/91‑1 (MQ=255)

                agtcattaGTTCCTAATAAATGCAACCACCTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGaa                                                                            <  2:420095/89‑1 (MQ=255)

                aaTCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGaa                                                                            <  2:2737879/91‑1 (MQ=255)

                 atcatcAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAAt                                                                           <  1:3115799/91‑1 (MQ=255)

                   catcaGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTg                                                                         <  2:3037724/91‑1 (MQ=255)

                     tcaGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCa                                                                       >  2:1760570/1‑91 (MQ=255)

                      caGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAg                                                                      <  1:1951678/91‑1 (MQ=255)

                      caGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAg                                                                      <  2:1271993/91‑1 (MQ=255)

                      caGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAg                                                                      <  1:1951367/91‑1 (MQ=255)

                      caGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAg                                                                      <  2:1946367/91‑1 (MQ=255)

                       aGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGt                                                                     <  1:2686529/91‑1 (MQ=255)

                        gTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACGTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTa                                                                    <  1:1449847/91‑1 (MQ=255)

                         ttCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTAc                                                                   >  2:3333929/1‑91 (MQ=255)

                          tCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACa                                                                  >  1:328998/1‑91 (MQ=255)

                           ccTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACaa                                                                 <  1:2389669/91‑1 (MQ=255)

                             taataaATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAAtt                                                               >  2:395149/1‑91 (MQ=255)

                              aataaATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTa                                                              <  2:934634/91‑1 (MQ=255)

                               ataaATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTAc                                                             <  2:2017673/91‑1 (MQ=255)

                                aaaatgcaaccaaagtcaatttatcacaaacttttgaacctattagttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTAcc                                                            >  1:596189‑M2/59‑91 (MQ=255)

                                 AAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACca                                                           <  1:947527‑M1/91‑1 (MQ=255)

                                  AATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACcac                                                          >  1:3839704‑M1/1‑91 (MQ=255)

                                  AATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACcac                                                          <  2:1093652‑M1/91‑1 (MQ=255)

                                   ATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACcaca                                                         <  2:1708937‑M1/91‑1 (MQ=255)

                                   ATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACcaca                                                         >  1:2427952‑M1/1‑91 (MQ=255)

                                   ATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACcaca                                                         <  2:1708651‑M1/91‑1 (MQ=255)

                                     GCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACaaa                                                       >  1:625108‑M1/1‑91 (MQ=255)

                                     GCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTGTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACaaa                                                       <  1:3416314‑M1/91‑1 (MQ=255)

                                      CAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACaaaa                                                      <  2:2483244‑M1/91‑1 (MQ=255)

                                       aaccaaagtcaatttatcacaaacttttgaacctattagttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACaaaaa                                                     >  1:1322423‑M2/52‑91 (MQ=255)

                                       aaccaaagtcaatttatcacaaacttttgaacctattagttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACaaaaa                                                     >  1:95572‑M2/52‑91 (MQ=255)

                                       AACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACaaaaa                                                     >  1:1192456‑M1/1‑91 (MQ=255)

                                       AACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACaaaaa                                                     >  1:685746‑M1/1‑91 (MQ=255)

                                       AACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACaaaaa                                                     >  1:2485348‑M1/1‑91 (MQ=255)

                                        ACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACcacaaacta                                                    <  2:3849492‑M1/91‑4 (MQ=255)

                                        ACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaat                                                    >  1:3041642‑M1/1‑91 (MQ=255)

                                        ACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaat                                                    >  1:1019645‑M1/1‑91 (MQ=255)

                                        ACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaat                                                    <  1:2325397‑M1/91‑1 (MQ=255)

                                        ACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGATGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaat                                                    <  2:3865974‑M1/91‑1 (MQ=255)

                                          caaagtcaatttatcacaaacttttgaacctattagttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaataa                                                  >  1:413151‑M2/49‑91 (MQ=255)

                                          caaagtcaatttatcacaaacttttgaacctattagttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaataa                                                  >  1:2920560‑M2/49‑91 (MQ=255)

                                           aaagtcaatttatcacaaacttttgaacctattagttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaataaa                                                 >  1:3236868‑M2/48‑91 (MQ=255)

                                            ACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAaaataaat                                                <  2:1466129‑M1/91‑1 (MQ=255)

                                             cTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATg                                               >  1:450299/1‑91 (MQ=255)

                                               aaTAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCa                                             <  1:2910341/91‑1 (MQ=255)

                                                  aGGTTCAAAAAATAATGAAAAATTGACTTTGGTAGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGaaaaa                                          <  2:776202/91‑3 (MQ=255)

                                                   ggTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGa                                         <  2:368101/91‑1 (MQ=255)

                                                    gTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGaa                                        <  1:2265992/91‑1 (MQ=255)

                                                    gTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGaa                                        >  2:910997/1‑91 (MQ=255)

                                                      tCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATa                                      >  1:1788917/1‑91 (MQ=255)

                                                       cAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATAc                                     <  1:549059/91‑1 (MQ=255)

                                                       cAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATAc                                     >  1:1607832/1‑91 (MQ=255)

                                                         aaaGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACaa                                   >  2:535588/1‑91 (MQ=255)

                                                         aaaGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACaa                                   >  1:1918358/1‑91 (MQ=255)

                                                          aaGTTTGTGATAAAGTGACTTTGGTTGCACTTACACTACTGACAAAGACTTGCAGTACAATTACCACAAGAATAAATGCAACGAATACaaa                                  >  2:1997230/1‑91 (MQ=255)

                                                           aGTTTGTGATAACTTGACTTTGGTTGCATTTTCACTACTGACAAAGAATGGCAGTACAATTACCACAAAAATAAATGCAACGAATACaaaa                                 <  1:2728502/91‑1 (MQ=255)

                                                           aGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACaaaa                                 <  1:1290027/91‑1 (MQ=255)

                                                             tttGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACaaaaaa                               >  1:361263/1‑91 (MQ=255)

                                                             tttGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACaaaaaa                               >  2:456945/1‑91 (MQ=255)

                                                             tttGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACaaaaaa                               >  1:2629384/1‑91 (MQ=255)

                                                              ttGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAat                              >  1:1220822/1‑91 (MQ=255)

                                                                gtgATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAatat                            <  2:250666/91‑1 (MQ=255)

                                                                gtgATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAatat                            <  2:250785/91‑1 (MQ=255)

                                                                 tgATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATc                           >  1:1406374/1‑91 (MQ=255)

                                                                  gATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCa                          >  2:289111/1‑91 (MQ=255)

                                                                  gATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCa                          >  1:1646408/1‑91 (MQ=255)

                                                                    tAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAgg                        <  1:1092105/91‑1 (MQ=255)

                                                                    tAAATTGACTTTGGTTGCATTTTCAATACTGATAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAgg                        <  1:3374370/91‑1 (MQ=255)

                                                                      aaTTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGtt                      <  2:2122724/91‑1 (MQ=255)

                                                                      aaTTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGtt                      <  2:2122522/91‑1 (MQ=255)

                                                                       aTTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTa                     <  2:3162456/91‑1 (MQ=255)

                                                                          gACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTc                  >  1:1994549/1‑91 (MQ=255)

                                                                           aCTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCAAAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCt                 <  2:1596512/91‑1 (MQ=255)

                                                                              ttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTg              >  2:1655778‑M2/13‑91 (MQ=255)

                                                                              ttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGAAAAAAAAAAAAAAAATATCAGGTTATTCTTTg              <  2:279173‑M2/79‑1 (MQ=255)

                                                                              ttggttgcatttGCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTg              <  2:1046426‑M2/79‑1 (MQ=255)

                                                                                ggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGaa            <  2:2684076‑M2/81‑1 (MQ=255)

                                                                                ggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGaa            >  1:2577693‑M2/11‑91 (MQ=255)

                                                                                    gcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAata        <  2:2083904‑M2/85‑1 (MQ=255)

                                                                                     catttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAatat       >  2:1430772‑M2/6‑91 (MQ=255)

                                                                                     catttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAAAGAAAACAAAAAATATCAGGTTATTCTTTGAAAatat       <  2:879813‑M2/86‑1 (MQ=255)

                                                                                      atttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATAtt      >  1:3190126‑M2/5‑91 (MQ=255)

                                                                                       tttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATAttt     <  2:3366142‑M2/88‑1 (MQ=255)

                                                                                       tttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATAttt     <  2:137493‑M2/88‑1 (MQ=255)

                                                                                          tCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTAt  >  2:1543727/1‑91 (MQ=255)

                                                                                          tCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTAt  <  1:982024/91‑1 (MQ=255)

                                                                                          tCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTAt  >  1:3659306/1‑91 (MQ=255)

AATAAATCTCTCCCATAATCATCAGTTCCTAATAAATGCAACCAACTAATAGGTTCAAAAGTTTGTGATAAATTGACTTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTAT  >  USA300TCH1516_ALE/1417734‑1417914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.