BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1616458	169 (0.830)	10 (0.050)	9/144	NT	5.6%	intergenic (‑43/‑39)	nudF/yhdN_2	ADP‑ribose pyrophosphatase/General stress protein 69
*	?	USA300TCH1516_ALE	= 1616473	184 (1.000)	10 (0.050)	9/144	NT	5.6%	intergenic (‑58/‑24)	nudF/yhdN_2	ADP‑ribose pyrophosphatase/General stress protein 69

Only 100 of 241 total aligned reads displayed.

TGTTCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCATGAGTTTAG  >  USA300TCH1516_ALE/1616383‑1616563

tGTTCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTaa                                                                                            >  1:3253253/1‑91 (MQ=255)

 gTTCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAa                                                                                           >  2:1837478‑M2/1‑90 (MQ=255)

  ttCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAag                                                                                          <  1:2773372‑M2/91‑3 (MQ=255)

  ttCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAag                                                                                          >  2:3479896‑M2/1‑89 (MQ=255)

   tCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAagt                                                                                         >  2:2022111‑M2/1‑88 (MQ=255)

   tCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAagt                                                                                         >  2:1164937‑M2/1‑88 (MQ=255)

   tCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAagt                                                                                         >  1:464905‑M2/1‑88 (MQ=255)

      aTCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAagtgta                                                                                      <  1:2476077‑M2/91‑7 (MQ=255)

      aTCAATTGTTTTTTCATTTAAATCCATTATAATCACGTGCCTTTAAATTCATATTATATATGGATACACTATGCTTGTTAGCTAAagtgta                                                                                      >  2:1068328‑M2/1‑85 (MQ=255)

       tCAATTGTTTTTTCTTTTATTTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTATCTCAagtgtat                                                                                     <  2:1556778‑M2/91‑8 (MQ=255)

        cAATTGTTTTTTCATTTAAATCGATTATAATCACGTTCCTTTAAATTCAGATTATATATTGATACACTATGCTTGTTAGCTAAagtgtatc                                                                                    >  2:3001685‑M2/1‑83 (MQ=255)

        cAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAagtgtatc                                                                                    <  1:676763‑M2/91‑9 (MQ=255)

         aaTTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCg                                                                                   <  1:3861466/91‑1 (MQ=255)

          aTTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGa                                                                                  >  1:160596/1‑91 (MQ=255)

           ttGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGaa                                                                                 >  1:574440/1‑91 (MQ=255)

           ttGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGaa                                                                                 >  2:1919496/1‑91 (MQ=255)

           ttGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGaa                                                                                 >  1:3199122/1‑91 (MQ=255)

           ttGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGGTAGCTAAAGTGTATCGaa                                                                                 <  2:1672505/91‑1 (MQ=255)

              ttttttCATTTATATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAgg                                                                              >  1:3031718/1‑91 (MQ=255)

               tttttCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGga                                                                             >  1:2717958/1‑91 (MQ=255)

                ttttCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGgag                                                                            <  1:3749282/91‑1 (MQ=255)

                ttttCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGgag                                                                            <  2:1954360/91‑1 (MQ=255)

                ttttCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGgag                                                                            <  2:812073/91‑1 (MQ=255)

                ttttCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGgag                                                                            >  2:100186/1‑91 (MQ=255)

                  ttCATTTAAATCCATTATAATCACGTTCCTTTAAATGCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGaa                                                                          <  2:3111763/91‑1 (MQ=255)

                   tCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAAc                                                                         >  1:1016878/1‑91 (MQ=255)

                   tCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAAc                                                                         >  1:3007127/1‑91 (MQ=255)

                    cATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGTACa                                                                        >  2:1020836/1‑91 (MQ=255)

                      tttAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGa                                                                      <  2:1130806/91‑1 (MQ=255)

                       ttAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGAc                                                                     >  1:2603285/1‑91 (MQ=255)

                         aaaTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACAt                                                                   <  1:582107/91‑1 (MQ=255)

                         aaaTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACAt                                                                   >  1:1572137/1‑91 (MQ=255)

                          aaTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGTAAGGAGAACAGACATg                                                                  >  2:1485013/1‑91 (MQ=255)

                          aaTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATg                                                                  >  1:3713424/1‑91 (MQ=255)

                          aaTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATg                                                                  <  1:1892009/91‑1 (MQ=255)

                           aTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGc                                                                 <  2:2725835/91‑1 (MQ=255)

                           aTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGc                                                                 <  1:2127617/91‑1 (MQ=255)

                           aTCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGc                                                                 <  1:559728/91‑1 (MQ=255)

                              cATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCaaa                                                              >  2:792161/1‑91 (MQ=255)

                              cATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCaaa                                                              >  2:964831/1‑91 (MQ=255)

                              cATTATAATCACGTTCATTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGAATCGAAAGGAGAACAGACATGCaaa                                                              >  2:1434517/1‑91 (MQ=255)

                               aTTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCaaaa                                                             >  2:232522/1‑91 (MQ=255)

                               aTTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCaaaa                                                             >  1:2071321/1‑91 (MQ=255)

                               aTTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCaaaa                                                             >  2:3602427/1‑91 (MQ=255)

                                  ataATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCaaaaaaa                                                          >  1:2586993/1‑91 (MQ=255)

                                       cACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAatatat                                                     <  1:3785463/91‑1 (MQ=255)

                                       cACGTTCCTTTAAATTCATATTATATATTGATACAATATGCTTGTTAGCTAAAGTGAATCGAAAGGAGAACAGACATGCAAAAAAatatat                                                     >  2:1476753/1‑91 (MQ=255)

                                         cGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATCTATTa                                                   >  1:2487072/1‑91 (MQ=255)

                                             ccTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTaaaaa                                               <  2:2530061/91‑1 (MQ=255)

                                             ccTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTaaaaa                                               >  1:2828744/1‑91 (MQ=255)

                                             ccTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTaaaaa                                               >  2:3165495/1‑91 (MQ=255)

                                              cTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAg                                              <  1:903554/91‑1 (MQ=255)

                                               tttAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGt                                             <  1:1302550/91‑1 (MQ=255)

                                               tttAAATTCACATTAGATATTCATACACCATGCTCGTTAGCAAACGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTaaaacgc                                             >  2:2119252/1‑88 (MQ=255)

                                                 tAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATGGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTgg                                           <  1:3426247/91‑1 (MQ=255)

                                                 tAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGAAAAAAAAAAAAATATATTAAAAAGTgg                                           <  2:2835812/91‑1 (MQ=255)

                                                  aaaTTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGt                                          >  2:1210708/1‑91 (MQ=255)

                                                   aaTTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTa                                         <  1:1733213/91‑1 (MQ=255)

                                                    aTTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTAt                                        <  1:3903964/91‑1 (MQ=255)

                                                    aTTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTAt                                        <  1:859922/91‑1 (MQ=255)

                                                    aTTCATATTATATATTGATACACGATGCGTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTAt                                        <  2:2905687/91‑1 (MQ=255)

                                                     ttCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTAtt                                       <  1:868476/91‑1 (MQ=255)

                                                      tCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTAttt                                      >  2:3238534/1‑91 (MQ=255)

                                                       cATATTATATATTGATACACTATGCTTGTTAGCTAAagtgtatcgatatataatatgaatttaaaggaacgtgattataatggatttaaat                                     <  2:411466‑M2/91‑56 (MQ=255)

                                                        atatTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATCAAAAAGTGGTATTTCa                                    >  2:3783322/1‑91 (MQ=255)

                                                        atatTATAGATTGATACACTATGCTTGATAGCTAAAATGTAACGAAAGGAAAACAGACATGCAAAAAAATATGTTAAAAAGTGGTATTTCa                                    <  1:3708147/91‑1 (MQ=255)

                                                         tattatATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCAt                                   <  2:506977/91‑1 (MQ=255)

                                                             atatatTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATc                               <  1:258134/91‑1 (MQ=255)

                                                              tatatTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCt                              <  2:2568177/91‑1 (MQ=255)

                                                              tatatTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCt                              <  2:2282035/91‑1 (MQ=255)

                                                                 atTGATACACTATGCTTGTTAGCTAAagtgtatcaatatataatatgaatttaaaggaacgtgattataatggatttaaatgaaaaaacaa                           <  2:3339098‑M2/91‑66 (MQ=255)

                                                                 atTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGaa                           >  2:1744725/1‑91 (MQ=255)

                                                                  ttGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAAt                          <  1:3623031/91‑1 (MQ=255)

                                                                   tGATACACTATGCTTGTTAGCTAAagtgtatcaatatataatatgaatttaaaggaacgtgattataatggatttaaatgaaaaaacaatt                         <  1:1694990‑M2/91‑68 (MQ=255)

                                                                    gATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTa                        >  1:2303758/1‑91 (MQ=255)

                                                                     aTACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAg                       >  1:528854/1‑91 (MQ=255)

                                                                      tACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAgg                      <  2:2187566/91‑1 (MQ=255)

                                                                      tACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAgg                      >  1:1765789/1‑91 (MQ=255)

                                                                      aacacTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAAAAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAgg                      <  2:2620172/90‑1 (MQ=255)

                                                                       acacTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTCAAAAGTGGTATTTCATTCTCTGAATTAGGt                     >  2:3402923/1‑91 (MQ=255)

                                                                         acTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCt                   <  1:1200819/91‑1 (MQ=255)

                                                                         acTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCt                   <  1:1908043/91‑1 (MQ=255)

                                                                          cTATGCTTGTTAGCTAAagtgtatcaatatataatatgaatttaaaggaacgtgattataatggatttaaatgaaaaaacaattgatcgaa                  <  2:2384479‑M2/91‑75 (MQ=255)

                                                                          cTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTa                  >  1:2294136/1‑91 (MQ=255)

                                                                          cTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTa                  >  1:3946473/1‑91 (MQ=255)

                                                                          cTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTa                  >  1:740226/1‑91 (MQ=255)

                                                                          cTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTa                  >  1:1056079/1‑91 (MQ=255)

                                                                           tATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAg                 <  1:1579782/91‑1 (MQ=255)

                                                                             tGCTTGTTAGCTAAagtgtatcaatatataatatgaatttaaaggaacgtgattataatggatttaaatgaaaaaacaattgatcgaacag               <  2:2467933‑M2/91‑78 (MQ=255)

                                                                              gCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGtt              >  2:200479/1‑91 (MQ=255)

                                                                               cTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTg             >  2:110540/1‑91 (MQ=255)

                                                                                  gTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCAt          >  2:3522693/1‑91 (MQ=255)

                                                                                  gTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCAt          >  2:545711/1‑91 (MQ=255)

                                                                                  gTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCAt          >  1:1049458/1‑91 (MQ=255)

                                                                                  gTTACCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCAt          >  1:3121375/1‑91 (MQ=255)

                                                                                    tAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCATGa        >  1:3535282/1‑91 (MQ=255)

                                                                                     aGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCATGAg       >  2:877208/1‑91 (MQ=255)

                                                                                      gCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCATGAGt      <  2:1353314/91‑1 (MQ=255)

                                                                                         aaaGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCACGAGTTTa   >  1:1973095/1‑91 (MQ=255)

                                                                                          aaGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCCTGAGTTTAg  >  1:3547936/1‑91 (MQ=255)

TGTTCGATCAATTGTTTTTTCATTTAAATCCATTATAATCACGTTCCTTTAAATTCATATTATATATTGATACACTATGCTTGTTAGCTAAAGTGTATCGAAAGGAGAACAGACATGCAAAAAAATATATTAAAAAGTGGTATTTCATTATCTGAATTAGGTCTAGGTTGCATGAGTTTAG  >  USA300TCH1516_ALE/1616383‑1616563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.