BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1627039	173 (0.850)	20 (0.110)	12/140	NT	10.9%	intergenic (‑192/+27)	USA300HOU_RS08070/gnd	hypothetical protein/6‑phosphogluconate dehydrogenase, decarboxylating
*	?	USA300TCH1516_ALE	= 1627047	176 (0.990)	20 (0.110)	12/140	NT	10.9%	intergenic (‑200/+19)	USA300HOU_RS08070/gnd	hypothetical protein/6‑phosphogluconate dehydrogenase, decarboxylating

Only 100 of 244 total aligned reads displayed.

AATACTTGTGTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAGCACCGAAGT  >  USA300TCH1516_ALE/1626957‑1627136

 aTACTTGTGTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAa                                                                                          <  1:3096737‑M2/91‑2 (MQ=255)

  tACTTGTGTAATTTTTTATAGGTTGTAGCTACTGTATCACACTCTCATTTATATTTATCCACAGATATAAAAAAGGATAGTATCTTTCAac                                                                                         <  1:3163408‑M2/91‑3 (MQ=255)

  tACTTGTGTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAac                                                                                         >  1:1411417‑M2/1‑89 (MQ=255)

  tACTTGTGTAATTTTTTATAGGTTGTAGCTACACTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAac                                                                                         >  1:3378030‑M2/1‑89 (MQ=255)

   aCTTGTGTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAACAGGATAGTATCTTTCAact                                                                                        <  2:288480‑M2/91‑4 (MQ=255)

   aCTTGTGTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAact                                                                                        <  2:1044038‑M2/91‑4 (MQ=255)

   aCTTGTGTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAact                                                                                        <  1:3412749‑M2/91‑4 (MQ=255)

      tgtgTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTCTCAactatc                                                                                     <  1:3785433‑M2/91‑7 (MQ=255)

        tgtAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAactatcct                                                                                   <  2:704883‑M2/91‑9 (MQ=255)

         gtAATTTTTTATAGGTTGTAGCTACTCTATCCCACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAactatcctt                                                                                  >  1:564915‑M2/1‑82 (MQ=255)

          aaatTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTAACAAAAAATAAAAAAAAGGATAGTATCTTTCAactatccttt                                                                                 >  2:2505993‑M2/2‑81 (MQ=255)

           aaTTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTa                                                                                >  2:3067634/1‑91 (MQ=255)

            aTTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTaa                                                                               <  2:173744/91‑1 (MQ=255)

            aTTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTaa                                                                               <  2:149177/91‑1 (MQ=255)

               ttttATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCa                                                                            <  1:840334/91‑1 (MQ=255)

                tttATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCaa                                                                           <  1:523779/91‑1 (MQ=255)

                 ttATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAat                                                                          <  1:1440699/91‑1 (MQ=255)

                 ttATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAat                                                                          <  1:1697042/91‑1 (MQ=255)

                 ttATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAat                                                                          <  1:1831798/91‑1 (MQ=255)

                 ttATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAat                                                                          <  2:577215/91‑1 (MQ=255)

                 ttATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAat                                                                          >  2:91795/1‑91 (MQ=255)

                  tataGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAata                                                                         >  1:1660485/1‑91 (MQ=255)

                   ataGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAatat                                                                        <  2:977147/91‑1 (MQ=255)

                      ggTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAAtattat                                                                     <  2:1642432/91‑1 (MQ=255)

                      ggTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAAtattat                                                                     <  1:2526612/91‑1 (MQ=255)

                      ggTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAAtattat                                                                     <  1:1206313/91‑1 (MQ=255)

                       gTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATattatt                                                                    >  2:2870092/1‑91 (MQ=255)

                         tGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTAttct                                                                  <  1:1068025/91‑1 (MQ=255)

                          gTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTAttctt                                                                 >  2:3880614/1‑91 (MQ=255)

                          gTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTAttctt                                                                 <  1:2039358/91‑1 (MQ=255)

                            aGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCa                                                               <  1:3591604/91‑1 (MQ=255)

                             gCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCaa                                                              <  2:309305/91‑1 (MQ=255)

                             gCTACTCTATCACACTCGCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCaa                                                              <  1:765413/91‑1 (MQ=255)

                              cTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAAt                                                             >  1:248872/1‑91 (MQ=255)

                              cTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAAt                                                             <  1:3883936/91‑1 (MQ=255)

                                aCTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATcc                                                           >  2:563005/1‑91 (MQ=255)

                                aCTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATcc                                                           <  1:2261449/91‑1 (MQ=255)

                                aCTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATcc                                                           >  1:3144922/1‑91 (MQ=255)

                                 ctctATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCa                                                          <  2:2088250/91‑1 (MQ=255)

                                 ctctATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCa                                                          >  1:259166/1‑91 (MQ=255)

                                 atctATCACACTCTCTTTTATATTTATCAAAAAAAAAAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCa                                                          <  2:3947967/90‑1 (MQ=255)

                                       cacaCTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAactatccttttttatatcttttgataaatataaaagaga                                                    <  1:1778866‑M2/91‑40 (MQ=255)

                                       cacaCTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTgtgt                                                    <  1:2229139/91‑1 (MQ=255)

                                          acTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTAAATCCATTGTGTATg                                                 >  2:3574929/1‑91 (MQ=255)

                                           ctctctTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATgg                                                >  2:187181/1‑91 (MQ=255)

                                             ctctTTTGTATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGaa                                              <  1:1956832/91‑1 (MQ=255)

                                             ctctTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGaa                                              >  1:2476150/1‑91 (MQ=255)

                                             ctctTTTATATTAATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGaa                                              >  1:3023792/1‑91 (MQ=255)

                                                ttttATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATAc                                           <  1:335149/91‑1 (MQ=255)

                                                 tttATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACg                                          >  1:327622/1‑91 (MQ=255)

                                                 tttATATTTAACAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACg                                          <  2:3925563/91‑1 (MQ=255)

                                                  ttATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGc                                         >  2:1949041/1‑91 (MQ=255)

                                                  ttATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGc                                         >  1:15504/1‑91 (MQ=255)

                                                  ttATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGc                                         <  1:961481/91‑1 (MQ=255)

                                                  ttATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAAAATTATTCTTCAATCCATTGTGTATGGAATACGc                                         >  2:471202/1‑91 (MQ=255)

                                                     tatTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCctt                                      >  1:3734263/1‑91 (MQ=255)

                                                     tatTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCctt                                      <  1:985021/91‑1 (MQ=255)

                                                      atTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCcttc                                     >  2:947703/1‑91 (MQ=255)

                                                       tttATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAACCAATATTATTCTTCAATCCATTGTGTATGGAATACGCcttct                                    >  1:2648825/1‑91 (MQ=255)

                                                         tATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCttt                                  >  1:859169/1‑91 (MQ=255)

                                                           tCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATGCGCCTTCTTTAt                                >  1:805241/1‑91 (MQ=255)

                                                           tCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAt                                <  1:1331972/91‑1 (MQ=255)

                                                           tCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAt                                <  1:2858909/91‑1 (MQ=255)

                                                            cAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtc                               <  2:615532/91‑1 (MQ=255)

                                                             aaaaGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtct                              >  2:2264685/1‑91 (MQ=255)

                                                               aaGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtcttt                            <  1:1237333/91‑1 (MQ=255)

                                                                aGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtctttt                           <  1:2957344/91‑1 (MQ=255)

                                                                 gATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtcttttc                          >  2:2406700/1‑91 (MQ=255)

                                                                 gATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtcttttc                          >  1:2314065/1‑91 (MQ=255)

                                                                 gATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtcttttc                          >  1:217085/1‑91 (MQ=255)

                                                                  atatAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAtcttttct                         >  2:2820618/1‑91 (MQ=255)

                                                                     taAAAAAGGATAGTATCTTTCAactatccttttttatatcttttgataaatataaaagagagtgtgatagagtagctacaacctataaaaa                      <  1:1328508‑M2/91‑70 (MQ=255)

                                                                     taAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTtttctttc                      >  1:576461/1‑91 (MQ=255)

                                                                     taAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTtttctttc                      <  1:1102833/91‑1 (MQ=255)

                                                                      aaaaaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcg                     >  2:2255763/1‑91 (MQ=255)

                                                                      aaaaaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcg                     <  2:1612242/91‑1 (MQ=255)

                                                                      aaaaaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcg                     <  2:3288458/91‑1 (MQ=255)

                                                                      aaaaaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTATGTATGGAATACGCCTTCTTTATCTTTTCTTTcg                     >  2:303399/1‑91 (MQ=255)

                                                                      aaaaaaGGATAGCATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcg                     <  2:3290134/91‑1 (MQ=255)

                                                                       aaaaaGGATAGTATCTTTCAactatccttttttatatcttttgataaatataaaagagagtgtgatagagtagctacaacctataacaaat                    <  1:3295598‑M2/91‑72 (MQ=255)

                                                                       aaaaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcgt                    >  1:1019698/1‑91 (MQ=255)

                                                                       aaaaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcgt                    >  1:1013146/1‑91 (MQ=255)

                                                                       aaaaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcgt                    <  1:2965433/91‑1 (MQ=255)

                                                                         aaaGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcgtac                  <  2:415094/91‑1 (MQ=255)

                                                                            ggATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTcgtacgta               >  2:1245367/1‑91 (MQ=255)

                                                                             gATAGTATCTTTCAactatccttttttatatcttttgataaatataaaagagagtgtgatagagtagctacaacctataaaaaattacaca              <  1:2353185‑M2/91‑78 (MQ=255)

                                                                             gATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTAt              >  1:2434455/1‑91 (MQ=255)

                                                                              aTAGGATCTGTCCACTATCCTTTAGTCAATATTGTTCCTCCATCCATTGTGTATGGGATACGCCTTCTTGATCTGGCCTTTCGTACGtgtg             >  2:3349690/1‑91 (MQ=255)

                                                                               tAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGa            >  1:4059/1‑91 (MQ=255)

                                                                               tAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGa            <  2:2912248/91‑1 (MQ=255)

                                                                                aGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAg           <  2:467014/91‑1 (MQ=255)

                                                                                aGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAg           >  1:2010934/1‑91 (MQ=255)

                                                                                aGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTAGCTTTTCTTTCGTACGTATGAg           <  2:2746013/91‑1 (MQ=255)

                                                                                 gTATCTTTCAactatccttttttatatcttttgataaatataaaagagagtgtgatagagtagctacaacctataaaaaattacacaagta          <  2:3534758‑M2/91‑82 (MQ=255)

                                                                                 gTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAGc          >  2:2080570/1‑91 (MQ=255)

                                                                                 gTATCTTCCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGACTCCGCATTCTTTATCTTTTCTTTCGTACGTATGAGc          >  2:2654944/1‑91 (MQ=255)

                                                                                   aTCTTTCAactatccttttttatatcttttgataaatataaaagagagtgtgatagagtagctacaacctataaaaaattacacaagtatt        <  1:3564004‑M2/91‑84 (MQ=255)

                                                                                     cTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAGCACCg      <  1:1261679/91‑1 (MQ=255)

                                                                                        tCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAGCACCGAag   >  1:2679345/1‑91 (MQ=255)

                                                                                         cAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAGCACCGAagt  <  1:213514/91‑1 (MQ=255)

AATACTTGTGTAATTTTTTATAGGTTGTAGCTACTCTATCACACTCTCTTTTATATTTATCAAAAGATATAAAAAAGGATAGTATCTTTCAACTATCCTTTAATCAATATTATTCTTCAATCCATTGTGTATGGAATACGCCTTCTTTATCTTTTCTTTCGTACGTATGAGCACCGAAGT  >  USA300TCH1516_ALE/1626957‑1627136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.