BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1732959 =	151 (0.740)	13 (0.080)	7/136	NT	8.8%	intergenic (+145/+92)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein
*	?	USA300TCH1516_ALE	1733016 =	141 (0.820)	13 (0.080)	7/136	NT	8.8%	intergenic (+202/+35)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein

Only 100 of 263 total aligned reads displayed.

GATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATT  >  USA300TCH1516_ALE/1732926‑1733106

gattcagattcaCGTAAAATTCGAATGCAAATATGAATGCTCCCCTTCAACTTTACGGTGTGTAAGTGTTTATGTGATGGGGCGCTTTCaa                                                                                            <  2:1470280/91‑1 (MQ=255)

gATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaa                                                                                            <  1:625922/91‑1 (MQ=255)

  ttCAAATTCTCTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaaaa                                                                                          <  1:3789967/91‑1 (MQ=255)

  ttCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaaaa                                                                                          >  1:1033102/1‑91 (MQ=255)

   tCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAat                                                                                         <  1:2456713/91‑1 (MQ=255)

    cAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAata                                                                                        <  1:3307109/91‑1 (MQ=255)

      aaTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATAtt                                                                                      <  2:2525391/91‑1 (MQ=255)

         tCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaa                                                                                   <  2:2174704/91‑1 (MQ=255)

          cACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaa                                                                                  >  1:3514658/1‑91 (MQ=255)

           aCTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaaa                                                                                 <  2:1837821/91‑1 (MQ=255)

           aCTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaaa                                                                                 <  2:1837642/91‑1 (MQ=255)

            tggatatgcttttcaatattttgaaagcgccccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAg                                                                                >  1:2176820‑M2/79‑91 (MQ=255)

            cTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAg                                                                                >  1:2730079/1‑91 (MQ=255)

            cTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAg                                                                                >  1:2587692/1‑91 (MQ=255)

             ttAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGc                                                                               >  2:1371396/1‑91 (MQ=255)

              tAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCa                                                                              >  2:2476219/1‑91 (MQ=255)

                aaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCata                                                                            >  2:1149011/1‑91 (MQ=255)

                     cTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaa                                                                       <  2:1211793/91‑1 (MQ=255)

                     cTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTCATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaa                                                                       >  2:3567561/1‑91 (MQ=255)

                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa                                                                      >  1:2693887/1‑91 (MQ=255)

                       aaTGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaaa                                                                     >  1:1369880/1‑91 (MQ=255)

                        aTGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAt                                                                    >  2:1139604/1‑91 (MQ=255)

                        aTGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAt                                                                    >  1:1988852/1‑91 (MQ=255)

                         tGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTCTTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAtt                                                                   >  1:3133316/1‑91 (MQ=255)

                         tGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAtt                                                                   >  2:1315962/1‑91 (MQ=255)

                          gCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAttt                                                                  >  2:399412/1‑91 (MQ=255)

                             aaTATGAAAGCGCCCCTTCAACTTTACACGGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa                                                               <  2:3609175/91‑1 (MQ=255)

                                 aGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaa                                                           >  2:3200553‑M1/2‑91 (MQ=255)

                                 TGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaa                                                           <  1:2749457‑M1/91‑1 (MQ=255)

                                 TGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaa                                                           <  2:1416765‑M1/91‑1 (MQ=255)

                                   AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                         >  2:3762239‑M1/1‑91 (MQ=255)

                                   AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                         >  2:3319607‑M1/1‑91 (MQ=255)

                                   AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                         <  1:1868290‑M1/91‑1 (MQ=255)

                                   AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                         <  2:484183‑M1/91‑1 (MQ=255)

                                     AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                       >  1:2833245‑M1/1‑91 (MQ=255)

                                     AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                       <  2:2977500‑M1/91‑1 (MQ=255)

                                     AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                       <  2:937399‑M1/91‑1 (MQ=255)

                                       CGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttatt                                                     >  2:3429239‑M1/1‑91 (MQ=255)

                                       CGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttatt                                                     >  1:1690777‑M1/1‑91 (MQ=255)

                                        GCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAACTTAAAGAAatttattt                                                    <  2:3040644‑M1/91‑1 (MQ=255)

                                         CCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                   >  2:2795494‑M1/1‑91 (MQ=255)

                                         CCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                   <  2:3228781‑M1/91‑1 (MQ=255)

                                         CCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                   >  2:1323464‑M1/1‑91 (MQ=255)

                                         CCCATTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                   >  1:3114086‑M1/1‑91 (MQ=255)

                                          CCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtct                                                  <  2:1553743‑M1/91‑1 (MQ=255)

                                           CCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                 <  2:1231288‑M1/91‑1 (MQ=255)

                                           CCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                 <  1:565573‑M1/91‑1 (MQ=255)

                                            catcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                                >  2:719267‑M2/47‑91 (MQ=255)

                                             atcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCtt                                               >  2:922335‑M2/46‑91 (MQ=255)

                                              tCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCttt                                              >  2:3117340/1‑91 (MQ=255)

                                                aaCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTAt                                            >  1:607303/1‑91 (MQ=255)

                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                           >  1:3458645/1‑91 (MQ=255)

                                                  cTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGCAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCt                                          >  2:2434469/1‑91 (MQ=255)

                                                  cTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCt                                          >  1:1414633/1‑91 (MQ=255)

                                                   tttACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCtt                                         >  2:1878664/1‑91 (MQ=255)

                                                    ttACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTc                                        <  2:446559/91‑1 (MQ=255)

                                                     tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa                                       <  2:1452042/91‑1 (MQ=255)

                                                     tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa                                       <  2:2689543/91‑1 (MQ=255)

                                                      acacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAt                                      >  2:2034881/1‑91 (MQ=255)

                                                       cacTGTGTAAGTGTTTATTTGATGGGGCGTTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt                                     <  2:2425183/91‑1 (MQ=255)

                                                         cTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtttt                                   <  1:3903200/91‑1 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                  >  2:3463973/1‑91 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                  >  2:3428897/1‑91 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                  <  2:1005163/91‑1 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                  <  2:567745/91‑1 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                  >  1:2326512/1‑91 (MQ=255)

                                                           gtgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCt                                 >  1:3959455/1‑91 (MQ=255)

                                                            tgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtt                                >  1:530750/1‑91 (MQ=255)

                                                             gtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCttt                               <  1:2930176/91‑1 (MQ=255)

                                                              tAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATCTTCtttt                              >  1:1959812/1‑91 (MQ=255)

                                                               aaGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCttttt                             <  1:125789/91‑1 (MQ=255)

                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                           >  1:2925499/1‑91 (MQ=255)

                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                           >  1:2217912/1‑91 (MQ=255)

                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                           >  2:1374255/1‑91 (MQ=255)

                                                                  tgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtct                          >  1:2140852/1‑91 (MQ=255)

                                                                   gtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtctc                         >  1:3016421/1‑91 (MQ=255)

                                                                   gtTTATTAGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtctc                         <  2:3515093/91‑1 (MQ=255)

                                                                    tttATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTctct                        >  1:1617102/1‑91 (MQ=255)

                                                                     ttATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCtt                       >  1:385676/1‑91 (MQ=255)

                                                                      tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTc                      >  1:1215386/1‑91 (MQ=255)

                                                                      tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTc                      <  2:2487173/91‑1 (MQ=255)

                                                                      tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTc                      >  1:456834/1‑91 (MQ=255)

                                                                      tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTc                      >  1:1570055/1‑91 (MQ=255)

                                                                       aTTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCg                     <  2:2222120/91‑1 (MQ=255)

                                                                        tttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                    <  1:961118/91‑1 (MQ=255)

                                                                          tGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTa                  <  1:2790515/91‑1 (MQ=255)

                                                                           gATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAt                 >  1:360079/1‑91 (MQ=255)

                                                                            aTGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTtttt                >  2:1868886/1‑91 (MQ=255)

                                                                            aTGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAtt                <  2:1451996/91‑1 (MQ=255)

                                                                             tGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTc               >  1:3853824/1‑91 (MQ=255)

                                                                              ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCg              <  2:315143‑M2/79‑1 (MQ=255)

                                                                                ggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAt            <  2:964717‑M2/81‑1 (MQ=255)

                                                                                   gctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCt         <  2:370667‑M2/84‑1 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg        >  2:1742386‑M2/7‑91 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg        <  2:1635152‑M2/85‑1 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg        >  1:333268‑M2/7‑91 (MQ=255)

                                                                                      ttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCctgaa      >  1:1070320‑M2/5‑89 (MQ=255)

                                                                                        caAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGtata    <  2:778971‑M2/89‑1 (MQ=255)

                                                                                        caAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGtata    <  1:1330358‑M2/89‑1 (MQ=255)

                                                                                         aAAATATTGAAAAGCATATCCAAAATTTAAAGTAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTatat   <  1:3368927‑M2/90‑1 (MQ=255)

GATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATT  >  USA300TCH1516_ALE/1732926‑1733106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.