BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1868943	198 (0.970)	16 (0.090)	7/142	NT	8.3%	intergenic (‑350/+120)	ytnP/trmB	putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase
*	?	USA300TCH1516_ALE	= 1868972	180 (1.000)	16 (0.090)	7/142	NT	8.3%	intergenic (‑379/+91)	ytnP/trmB	putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase

Only 100 of 312 total aligned reads displayed.

TAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCT  >  USA300TCH1516_ALE/1868882‑1869062

tAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCa                                                                                            >  2:1668737/1‑91 (MQ=255)

 aGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAg                                                                                           >  1:461801‑M2/1‑90 (MQ=255)

  gTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgt                                                                                          >  2:774369‑M2/1‑89 (MQ=255)

  gTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgt                                                                                          <  1:1234981‑M2/91‑3 (MQ=255)

    taagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTcc                                                                                        >  1:178649‑M1/50‑91 (MQ=255)

     aCTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccg                                                                                       >  2:2135437‑M2/1‑86 (MQ=255)

     aCTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccg                                                                                       >  2:2151317‑M2/1‑86 (MQ=255)

     aCTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccg                                                                                       <  1:1815497‑M2/91‑6 (MQ=255)

      cTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccga                                                                                      >  1:1488989‑M2/1‑85 (MQ=255)

      agtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGa                                                                                      >  1:2376738‑M1/48‑91 (MQ=255)

       ttttAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccgat                                                                                     <  2:2746853‑M2/91‑8 (MQ=255)

        tttAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccgatt                                                                                    <  1:2616206‑M2/91‑9 (MQ=255)

         ttAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAttccgattt                                                                                   <  2:3214136‑M2/91‑10 (MQ=255)

          tAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATtta                                                                                  <  1:910170/91‑1 (MQ=255)

          tAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATtta                                                                                  >  2:2555760/1‑91 (MQ=255)

           aaTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttat                                                                                 <  1:2712049/91‑1 (MQ=255)

            aTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatt                                                                                >  1:1574675/1‑91 (MQ=255)

            aTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatt                                                                                >  1:1206051/1‑91 (MQ=255)

            aTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatt                                                                                >  2:1077607/1‑91 (MQ=255)

              tataGAGATAATTGCGCTTTTTTTATATTTAAAATCAAAAAATTGGACAGATGAAAAGTTAAAAACTTTTTCTATCAGTCCGATTtattat                                                                              >  2:3390308/1‑91 (MQ=21)

              tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                                              <  2:3563588/91‑1 (MQ=255)

                taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATCAATTATAg                                                                            >  2:654422/1‑91 (MQ=255)

                taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCAGATTTATTATAg                                                                            <  1:3038380/91‑1 (MQ=255)

                 agagATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGa                                                                           <  2:1835368/91‑1 (MQ=255)

                  gagaTAATTGCGCTTTTTTTATTTTTAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTTCATCAGTCCGATTTATTATAGaa                                                                          >  2:3937414/1‑91 (MQ=255)

                   agaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAc                                                                         <  1:3725514/91‑1 (MQ=255)

                    gaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                        <  1:2334501/91‑1 (MQ=255)

                    gaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                        <  1:1104542/91‑1 (MQ=255)

                    gaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                        >  2:2217990/1‑91 (MQ=255)

                    gaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                        >  1:48490/1‑91 (MQ=255)

                      tAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCtt                                                                      >  1:3350705/1‑91 (MQ=255)

                        aTTGCGCTTTTTTTATATTCAAAATCCAAAAATCGGACCGATGAAAAGTTAAAAACTTTTTCCATCACTCCGATTTATTATAGAACCTTTa                                                                    >  2:2779373/1‑91 (MQ=21)

                          tGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                                                  <  1:2270867/91‑1 (MQ=255)

                          tGCGCTTTTTTTATATACAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                                                  <  2:178123/91‑1 (MQ=255)

                           gcgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCt                                                                 <  1:2322505/91‑1 (MQ=255)

                           gcgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCt                                                                 >  1:3609406/1‑91 (MQ=255)

                            cgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCta                                                                >  2:1093203/1‑91 (MQ=255)

                            cgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCta                                                                <  2:3834807/91‑1 (MQ=255)

                             gcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtat                                                               >  1:1126277/1‑91 (MQ=255)

                              cTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtata                                                              <  2:2863676/91‑1 (MQ=255)

                              cTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtata                                                              >  1:1625428/1‑91 (MQ=255)

                                 tttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGaa                                                           >  2:360214/1‑91 (MQ=255)

                                  ttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAAc                                                          >  1:216224/1‑91 (MQ=255)

                                   tttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAAcc                                                         <  1:700241/91‑1 (MQ=255)

                                    ttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCa                                                        >  1:3429339/1‑91 (MQ=255)

                                     tataTTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAt                                                       >  2:2588327/1‑91 (MQ=255)

                                      atatTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAtt                                                      <  1:2189450/91‑1 (MQ=255)

                                         ttCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATtata                                                   <  1:1135324/91‑1 (MQ=255)

                                           caaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGt                                                 <  1:3475220/91‑1 (MQ=255)

                                           caaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGt                                                 <  2:2972995/91‑1 (MQ=255)

                                             aaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTAc                                               <  1:3100217/91‑1 (MQ=255)

                                               atcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGa                                             <  1:3094659/91‑1 (MQ=255)

                                                 caaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaa                                           <  2:3269657/91‑1 (MQ=255)

                                                  aaaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaa                                          >  1:3939271/1‑91 (MQ=255)

                                                  aaaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaa                                          <  1:2227945/91‑1 (MQ=255)

                                                     AAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAac                                       <  1:2985480‑M1/91‑1 (MQ=255)

                                                       ATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAacac                                     >  2:2234451‑M1/1‑91 (MQ=255)

                                                        TCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATAAAAAAAAAAAAAAACACt                                    >  2:2082989‑M1/1‑91 (MQ=255)

                                                         cGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccgattttttgattttgaatataaaaaaagcgcaattatctctataatcaaaagt                                   <  2:1436365‑M2/91‑58 (MQ=255)

                                                         CGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATCGAACCATTATAGTACGAAAAAACACtt                                   <  2:548987‑M1/91‑1 (MQ=255)

                                                         CGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACtt                                   <  1:1089311‑M1/91‑1 (MQ=255)

                                                         CGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACtt                                   <  2:2402811‑M1/91‑1 (MQ=255)

                                                          GGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTa                                  >  1:1940021‑M1/1‑91 (MQ=255)

                                                           GACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTAt                                 <  1:2818700‑M1/91‑1 (MQ=255)

                                                            ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                <  2:1538656‑M1/91‑1 (MQ=255)

                                                            ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                <  1:3182541‑M1/91‑1 (MQ=255)

                                                            ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                <  2:1188028‑M1/91‑1 (MQ=255)

                                                            ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                <  1:2410746‑M1/91‑1 (MQ=255)

                                                            ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                >  2:1973576‑M1/1‑91 (MQ=255)

                                                            ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                <  1:1344781‑M1/91‑1 (MQ=255)

                                                             CAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGa                               <  1:3846417‑M1/91‑1 (MQ=255)

                                                             CAGATGAAAAGTTAAAAACTTTTTCCATCAATCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACTAAAAAACACTTATGa                               >  2:805191‑M1/1‑91 (MQ=255)

                                                              aGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAt                              <  1:2073266/91‑1 (MQ=255)

                                                                  gAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTa                          <  1:1002895/91‑1 (MQ=255)

                                                                    aaaGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtg                        <  1:576425/91‑1 (MQ=255)

                                                                       gTTAAAAACTTTTTCCATCAgtccgattttttgtttttgtatataaaaaaagcgcaattatctctataattaaaagtgactaaacaaataa                     <  2:3111385‑M2/91‑72 (MQ=255)

                                                                       gTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTGATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtgtac                     <  2:450312/91‑3 (MQ=255)

                                                                         tAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtgtacac                   <  1:380011/91‑5 (MQ=255)

                                                                         tAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTAc                   >  1:890167/1‑91 (MQ=255)

                                                                          aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                  <  1:880084/91‑1 (MQ=255)

                                                                          aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                  >  1:389303/1‑91 (MQ=255)

                                                                          aaaaaCTGTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTGTAGAACCATAAAAGAACGAAAAAACACTTATGATTGTATGTGTACa                  <  2:2482009/91‑1 (MQ=37)

                                                                           aaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACAt                 >  2:1364914/1‑91 (MQ=255)

                                                                            aaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATa                <  2:1014381/91‑1 (MQ=255)

                                                                            aaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATa                >  2:2035469/1‑91 (MQ=255)

                                                                             aaCTTTTTCCATCTTTCCGATTTATTATAGAACCTTTCTCTATAGAACCATTATAGTACGAAAACACACTTATGATTGTATGTGTAAATAc               >  2:1331376/1‑91 (MQ=38)

                                                                             aaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATAc               >  2:582240/1‑91 (MQ=255)

                                                                             aaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTACACATAc               <  1:2504610/91‑1 (MQ=255)

                                                                               cTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATAccc             <  1:28721/91‑1 (MQ=255)

                                                                                   ttCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCAt         <  1:1118980/91‑1 (MQ=255)

                                                                                    tCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATa        >  2:3659766/1‑91 (MQ=255)

                                                                                    tCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAAAATAGAAAAAAAAAACACTTATGATTGTATGTGTACATACCCTCATa        <  2:3468079/91‑1 (MQ=38)

                                                                                     ccATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATaa       >  1:3531851/1‑91 (MQ=255)

                                                                                      cATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAg      >  1:3290246/1‑91 (MQ=255)

                                                                                      cATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAGGGTATGTACACATACAATCATAAg      <  2:1927261/91‑1 (MQ=21)

                                                                                       aTCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGt     <  1:63063/91‑1 (MQ=255)

                                                                                        tCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTg    <  1:970040/91‑1 (MQ=255)

                                                                                         cAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGCGTACATACCCTCATAAGTGc   <  1:1644332/91‑1 (MQ=255)

                                                                                         cAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAGGGTATGTACACATACAATCATAAGTgt   <  1:1742825/91‑2 (MQ=21)

                                                                                          aGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGct  >  2:290671/1‑91 (MQ=255)

TAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCT  >  USA300TCH1516_ALE/1868882‑1869062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.