BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2067939	221 (1.080)	14 (0.080)	8/138	NT	6.1%	intergenic (+52/‑368)	ppaC/mdlD	putative manganese‑dependent inorganic pyrophosphatase/NAD(P)‑dependent benzaldehyde dehydrogenase
*	?	USA300TCH1516_ALE	= 2067962	239 (1.360)	14 (0.080)	8/138	NT	6.1%	intergenic (+75/‑345)	ppaC/mdlD	putative manganese‑dependent inorganic pyrophosphatase/NAD(P)‑dependent benzaldehyde dehydrogenase

Only 100 of 324 total aligned reads displayed.

AGCATTAACAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTA  >  USA300TCH1516_ALE/2067872‑2068052

 gCATTAACAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCa                                                                                           <  2:1303655‑M2/91‑2 (MQ=255)

 gCATTAACAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCa                                                                                           <  1:2334999‑M2/91‑2 (MQ=255)

  cATTAACAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaa                                                                                          <  1:3851784‑M2/91‑3 (MQ=255)

  cATTAACAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaa                                                                                          <  1:2569972‑M2/91‑3 (MQ=255)

   aTTAACAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTGACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaat                                                                                         >  2:3678239‑M2/1‑88 (MQ=255)

      aaCAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaatgaa                                                                                      >  2:3235727‑M2/1‑85 (MQ=255)

      aaCAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaatgaa                                                                                      <  1:3949794‑M2/91‑7 (MQ=255)

       aCAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaatgaac                                                                                     >  1:3469395‑M2/1‑84 (MQ=255)

        cAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaatgaact                                                                                    <  2:1262185‑M2/91‑9 (MQ=255)

        cAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCaatgaact                                                                                    <  1:3256102‑M2/91‑9 (MQ=255)

            ataataCTATACTACTGTCTAATCATAGACATGTTGTATTTAACTAACAGTTCATTAAATTAGAATTTATTTCACTTTCAATGAACTGttt                                                                                <  2:3024468/91‑1 (MQ=255)

             taataCTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACCTTCAATGAACTGtttt                                                                               >  2:841085/1‑91 (MQ=255)

              aataCTATATTACTGTCTAATTACAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGttttt                                                                              >  2:3577323/1‑91 (MQ=255)

               ataCTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGtttttt                                                                             <  2:3863203/91‑1 (MQ=255)

                taCTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTttta                                                                            >  1:1010319/1‑91 (MQ=255)

                taCTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTttta                                                                            <  2:2426887/91‑1 (MQ=255)

                taCTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTttta                                                                            >  2:1052100/1‑91 (MQ=255)

                taCTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTttta                                                                            <  1:1848456/91‑1 (MQ=255)

                  cTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTtttatt                                                                          >  2:2337316/1‑91 (MQ=255)

                  cTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTtttatt                                                                          <  1:2615311/91‑1 (MQ=255)

                        tACTGTCTAATTATCGACATGTTGTATTTAACTAACAGTTCATTAAAGAAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGtt                                                                    >  2:2630529/1‑91 (MQ=255)

                        tACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGtt                                                                    <  1:1245803/91‑1 (MQ=255)

                           tGTCTAATTATAGACATGTTGTATTGCACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGa                                                                 <  2:3419046/91‑1 (MQ=255)

                              cTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTa                                                              <  2:736787/91‑1 (MQ=255)

                                aaTTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAAt                                                            >  2:2479312/1‑91 (MQ=255)

                                 aTTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAAtt                                                           >  2:402168/1‑91 (MQ=255)

                                 aTTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAAtt                                                           <  1:1443611/91‑1 (MQ=255)

                                 aTTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAAtt                                                           >  2:2998684/1‑91 (MQ=255)

                                   tataGACATGTTGTATTTAACTAACAGTTCATTGAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTCTTTACGTTTGACTAATTTa                                                         >  2:1893512/1‑91 (MQ=255)

                                   tataGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTa                                                         >  1:2490035/1‑91 (MQ=255)

                                     taGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACa                                                       <  2:1640896/91‑1 (MQ=255)

                                     taGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACa                                                       >  2:2683838/1‑91 (MQ=255)

                                     taGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACa                                                       >  1:1299237/1‑91 (MQ=255)

                                      aGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACaa                                                      <  1:2831421/91‑1 (MQ=255)

                                      aGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACaa                                                      >  2:1387721/1‑91 (MQ=255)

                                      aGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACaa                                                      <  2:3802333/91‑1 (MQ=255)

                                      aGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACaa                                                      >  1:1753885/1‑91 (MQ=255)

                                      aGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACaa                                                      >  1:3907128/1‑91 (MQ=255)

                                       gACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAAc                                                     <  1:442534/91‑1 (MQ=255)

                                       gACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAAc                                                     >  1:2864803/1‑91 (MQ=255)

                                        aCATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAAcc                                                    <  1:522544/91‑1 (MQ=255)

                                        aCATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAAcc                                                    >  1:2911183/1‑91 (MQ=255)

                                         cATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAAccc                                                   >  2:225282/1‑91 (MQ=255)

                                         cATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAAccc                                                   >  1:2977245/1‑91 (MQ=255)

                                         cATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAAccc                                                   >  1:1586201/1‑91 (MQ=255)

                                          aTGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCt                                                  >  1:238853/1‑91 (MQ=255)

                                             ttgtATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCtttt                                               >  2:3107307/1‑91 (MQ=255)

                                                 aTTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCaa                                           >  2:3304074/1‑91 (MQ=255)

                                                 aTTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCaa                                           >  1:734158/1‑91 (MQ=255)

                                                   ttAACTAACAGTTCATTAAAGTAGTATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAta                                         <  2:3680629/91‑1 (MQ=255)

                                                   ttAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAta                                         >  2:1161498/1‑91 (MQ=255)

                                                    taactaacAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAtag                                        <  1:3819650/91‑1 (MQ=255)

                                                    taactaacAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAtag                                        <  1:2426502/91‑1 (MQ=255)

                                                      actaacAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAtagta                                      >  1:1550412/1‑91 (MQ=255)

                                                      actaacAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAtagta                                      >  1:3663392/1‑91 (MQ=255)

                                                      actaacAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAtagta                                      >  2:2572341/1‑91 (MQ=255)

                                                       ctaacAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAAtagtag                                     >  2:1365874/1‑91 (MQ=255)

                                                        taacAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATagtagt                                    <  2:537552/91‑1 (MQ=255)

                                                           cAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGtttt                                 <  2:663126/91‑1 (MQ=255)

                                                           cAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGtttt                                 >  1:725977/1‑91 (MQ=255)

                                                           cAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGtttt                                 <  2:2114371/91‑1 (MQ=255)

                                                           cAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTAGTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGtttt                                 <  2:1182097/91‑1 (MQ=255)

                                                            aGTTCATTAAAGTAGAATTTATTTCACTTTCaatgaactgctagttaaatacaacatgtctataattagacagtaatatagtattattttg                                <  2:3258050‑M2/91‑61 (MQ=255)

                                                             gTTCATTAAAGTAGAATTTATTTCACTTTCaatgaactgttagttaaatacaacatgtctataattagacagtaatatagtattattttgt                               <  2:2955001‑M2/91‑62 (MQ=255)

                                                             gTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTa                               <  2:371900/91‑1 (MQ=255)

                                                              ttCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTAt                              >  1:567410/1‑91 (MQ=255)

                                                               tCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTTTTTTTTTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTAtt                             >  2:1119331/1‑91 (MQ=255)

                                                                cATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTc                            >  2:518337/1‑91 (MQ=255)

                                                                 aTTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTcc                           <  2:1743673/91‑1 (MQ=255)

                                                                  ttAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCt                          >  1:588762/1‑91 (MQ=255)

                                                                   tAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACTCTTTTTCAATAGTAGTTTTTATTCCtt                         >  2:3606264/1‑91 (MQ=255)

                                                                    aaaGTAGAATTTATTTCACTTTCaatgaactgttagttaaatacaacatgtctataattagacagtaatatagtattattttgttaatgct                        <  1:3183015‑M2/91‑69 (MQ=255)

                                                                    aaaGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCttt                        >  1:2358212/1‑91 (MQ=255)

                                                                    aaaGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCttt                        >  2:2808640/1‑91 (MQ=255)

                                                                     aaGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTTTTTTTTTTTTACTATTTTACAACCCTTTTTCATTTGTTGTTTTTTTTTCtttt                       >  2:1551843/1‑90 (MQ=255)

                                                                     aaGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCC‑TTTTCAATAGTAGTTTTTAGTCCTTTAg                      >  1:2131316/1‑91 (MQ=255)

                                                                      aGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAg                      >  1:932236/1‑91 (MQ=255)

                                                                       gTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATTTTTGTTTTTATTCCTTTAGc                     >  2:766581/1‑91 (MQ=255)

                                                                       gTAGAATGTATGGCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTAGTCCTTTAGc                     <  2:2533356/91‑1 (MQ=255)

                                                                        tAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCt                    <  1:86881/91‑1 (MQ=255)

                                                                          gAATTTATTTCACTTTCaatgaactgttagttaaatacaacatgtctataattagacagtaatatagtattattttgttaatgcttcagtg                  <  1:2550388‑M2/91‑75 (MQ=255)

                                                                          gAATTTATTTCACTTTCaatgaactgttagttaaatacaacatgtctataattagacagtaatatagtattattttgttaatgcttcagtg                  <  1:270951‑M2/91‑75 (MQ=255)

                                                                          gAATTTATTTCACTTTCAATGAACTGTTTTTTATTTATTTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTAc                  >  2:1317289/1‑91 (MQ=255)

                                                                          gAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTAc                  >  1:984560/1‑91 (MQ=255)

                                                                          gAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTAc                  >  1:1992613/1‑91 (MQ=255)

                                                                          gAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTAc                  >  1:2788283/1‑91 (MQ=255)

                                                                          gAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTAc                  >  1:3506851/1‑91 (MQ=255)

                                                                          gAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTCTTATTCCTTTAGCTAc                  >  2:1455340/1‑91 (MQ=255)

                                                                           aaTTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTAcc                 >  2:274285/1‑91 (MQ=255)

                                                                           aaTTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTAcc                 <  2:3141009/91‑1 (MQ=255)

                                                                           aaTTTATTTCACTTTCAATGAACTGGTTTTTATTTACGTTTGACTAATTTACAACCCTGTTTCAATAGTAGGTTTTATTCCTTTAGCTGcc                 >  1:1174943/1‑91 (MQ=255)

                                                                              ttatttCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTa              >  2:2024017/1‑91 (MQ=255)

                                                                                 tttCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAAcc           <  2:3869486/91‑1 (MQ=255)

                                                                                  ttCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACACATAATCAATAGTAGTTTTCATGCCTTTAGCTACGCTATccg          <  2:579133/91‑2 (MQ=255)

                                                                                   tCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCca         >  2:2218449/1‑91 (MQ=255)

                                                                                   tCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCca         <  2:2693629/91‑1 (MQ=255)

                                                                                   tCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTGTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCca         <  2:1509400/91‑1 (MQ=255)

                                                                                    cACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCcac        >  1:3638249/1‑91 (MQ=255)

                                                                                      cTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAg      >  2:1603494/1‑91 (MQ=255)

                                                                                        ttCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGAt    >  1:1267582/1‑91 (MQ=255)

AGCATTAACAAAATAATACTATATTACTGTCTAATTATAGACATGTTGTATTTAACTAACAGTTCATTAAAGTAGAATTTATTTCACTTTCAATGAACTGTTTTTTATTTACGTTTGACTAATTTACAACCCTTTTTCAATAGTAGTTTTTATTCCTTTAGCTACCCTAACCCACAGATTA  >  USA300TCH1516_ALE/2067872‑2068052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.