BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2455747 =	108 (0.530)	13 (0.080)	5/132	NT	10.7%	intergenic (+5/+61)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A
*	?	USA300TCH1516_ALE	2455795 =	127 (0.760)	13 (0.080)	5/132	NT	10.7%	intergenic (+53/+13)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A

Only 100 of 232 total aligned reads displayed.

AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGTCTC  >  USA300TCH1516_ALE/2455705‑2455885

aaaaagCTGAAGAACAAGCTTCAGATAAAAACAAATAATGACAAAGCGCTGGCTAGTACCTCTTAAAGAGATGATGCTAGCAAGCGCtttt                                                                                            <  2:679027/91‑1 (MQ=255)

 aaaaaCTGAAGCACAATCTTCAGATAACAACAAATAATAACAAAGCGCGTGCTAGTACCTCTGAAAAAGATGATGCTAGCCTGCGCTTTTc                                                                                           <  2:1928332/91‑1 (MQ=255)

 aaaaaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTc                                                                                           <  1:368347/91‑1 (MQ=255)

    aaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctat                                                                                        <  2:236363/91‑1 (MQ=255)

     aCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctata                                                                                       >  1:911442/1‑91 (MQ=255)

     aCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctata                                                                                       >  2:2838177/1‑91 (MQ=255)

        gaagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAATACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatacta                                                                                    >  1:3823049/1‑91 (MQ=255)

          agaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactata                                                                                  <  2:1189802/91‑1 (MQ=255)

           gaaCAATCTTCAGATAGAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                                 <  2:3785809/91‑1 (MQ=255)

           gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                                 <  1:1506693/91‑1 (MQ=255)

            aaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatata                                                                                >  2:426098/1‑91 (MQ=255)

                 tCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt                                                                           <  1:186152/91‑1 (MQ=255)

                   gtCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAtttt                                                                         <  2:2855970/90‑1 (MQ=255)

                    tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                                                        <  1:1001860/91‑1 (MQ=255)

                    tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGACGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                                                        >  2:1645901/1‑91 (MQ=255)

                     cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATCATTTTTc                                                                       >  1:1958186/1‑91 (MQ=255)

                       gATAAAAACAAATAATAGCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa                                                                     <  2:909856/91‑1 (MQ=255)

                       gATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGGTGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa                                                                     >  1:92984/1‑91 (MQ=255)

                         tAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaaa                                                                   <  1:2342795/91‑1 (MQ=255)

                          aaaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTAAATATTATTTTTCTaaaa                                                                  <  2:205661/91‑1 (MQ=255)

                              aCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt                                                              <  2:2364758/91‑1 (MQ=255)

                               cAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTa                                                             <  2:2552810/91‑1 (MQ=255)

                                aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTaa                                                            >  2:1300265/1‑91 (MQ=255)

                                aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTaa                                                            >  2:1884187/1‑91 (MQ=255)

                                aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTACACTATATATTATTTTTCTAAAATTTTaa                                                            >  2:2297010/1‑91 (MQ=255)

                                  ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                                          >  2:2230091/1‑91 (MQ=255)

                                  ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                                          <  2:321410/91‑1 (MQ=255)

                                    aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                                        <  1:909304/91‑1 (MQ=255)

                                    aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                                        <  2:128346/91‑1 (MQ=255)

                                    aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                                        <  2:3096661/91‑1 (MQ=255)

                                     ataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc                                                       >  2:2064341/1‑91 (MQ=255)

                                     ataaCAAAGCGCTTGCTAGTACCTCGTAAAAAGATGATGCTAGCGAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc                                                       <  2:3421645/91‑1 (MQ=255)

                                      taaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCct                                                      <  1:703493/91‑1 (MQ=255)

                                       aaCAGAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCGAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                                                     <  2:1577850/91‑1 (MQ=255)

                                       aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                                                     <  1:3772279/91‑1 (MQ=255)

                                       aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                                                     <  1:508642/91‑1 (MQ=255)

                                        aCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctct                                                    <  1:1521925/91‑1 (MQ=255)

                                         cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                                   <  1:1417280/91‑1 (MQ=255)

                                         cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                                   >  1:3005816/1‑91 (MQ=255)

                                           AAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGa                                                 <  2:376967‑M1/91‑1 (MQ=255)

                                             GCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGt                                               <  1:1474673‑M1/91‑1 (MQ=255)

                                              ctCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg                                              <  2:2729043‑M1/89‑1 (MQ=255)

                                              CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg                                              >  1:3214752‑M1/1‑91 (MQ=255)

                                              CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg                                              <  1:2947661‑M1/91‑1 (MQ=255)

                                              CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg                                              <  1:2695740‑M1/91‑1 (MQ=255)

                                               GCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGc                                             >  1:2419764‑M1/1‑91 (MQ=255)

                                               GCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGc                                             >  2:2059076‑M1/1‑91 (MQ=255)

                                                cTTGCTAGTACCACTTAAAAAGAAGATGCTAGCAAGCGCTTTGCTATACTATATATAATTTTTCTAAAATTTTAACACCCTATTGAGTGcc                                            <  2:1808622/91‑1 (MQ=255)

                                                CTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGCGTGcc                                            <  1:602742‑M1/91‑1 (MQ=255)

                                                  TGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTa                                          >  1:779619‑M1/1‑91 (MQ=255)

                                                   GCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc                                         >  2:1080438‑M1/1‑91 (MQ=255)

                                                   GCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc                                         <  2:1784822‑M1/91‑1 (MQ=255)

                                                     TAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa                                       >  1:653521‑M1/1‑91 (MQ=255)

                                                      AGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAAt                                      >  1:1407081‑M1/1‑91 (MQ=255)

                                                       gcatcatctttttaagaggtactagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATa                                     >  1:276523‑M2/36‑91 (MQ=255)

                                                       gcatcatctttttaagaggtactagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATa                                     >  1:277117‑M2/36‑91 (MQ=255)

                                                       GTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATa                                     >  1:693688‑M1/1‑91 (MQ=255)

                                                        tACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATaa                                    <  1:3844139/91‑1 (MQ=255)

                                                        catcatctttttaagaggtactagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATaa                                    >  2:2665316‑M2/35‑91 (MQ=255)

                                                         atcatctttttaagaggtactagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                                   >  1:1354387‑M2/34‑91 (MQ=255)

                                                         aCCTCTTAAAATGATGATGCTAGGAAGCGCTTTTCTATACTATATATTATTTTTCTAAATTTTTAACACCCTCTTGAGTGCCTACAATAAc                                   <  2:3020655/91‑1 (MQ=255)

                                                         aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                                   <  1:3263042/91‑1 (MQ=255)

                                                         aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                                   <  1:802114/91‑1 (MQ=255)

                                                          ccTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACt                                  <  1:2576010/91‑1 (MQ=255)

                                                           ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                                 >  2:861709/1‑91 (MQ=255)

                                                           ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                                 <  1:2206926/91‑1 (MQ=255)

                                                            tctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTg                                <  2:911442/91‑1 (MQ=255)

                                                            tctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTg                                >  1:3869529/1‑91 (MQ=255)

                                                            tctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTg                                <  1:2675537/91‑1 (MQ=255)

                                                              ttAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGAt                              >  1:2263285/1‑91 (MQ=255)

                                                              ttAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGAt                              <  2:2956296/91‑1 (MQ=255)

                                                              ttAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGAt                              >  1:306950/1‑91 (MQ=255)

                                                               tAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTACCTACAATAACTTGATc                             >  1:3388845/1‑91 (MQ=255)

                                                                  aaaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGc                          <  2:2144074/91‑1 (MQ=255)

                                                                   aaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGcc                         >  2:632787/1‑91 (MQ=255)

                                                                   aaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGcc                         >  1:2827745/1‑91 (MQ=255)

                                                                    aGATGATGCTAGCCAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGCGTGCCTACAATAACTTGATCTGCCa                        >  2:3825539/1‑91 (MQ=255)

                                                                     gatgatGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCat                       >  1:2067476/1‑91 (MQ=255)

                                                                      atgatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACTCCCTCTTGAGTGCCTACAATAACTTGATCTGCCata                      >  2:3118935/1‑91 (MQ=255)

                                                                      atgatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCata                      >  2:3048404/1‑91 (MQ=255)

                                                                        gatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATc                    >  2:3317096/1‑91 (MQ=255)

                                                                          tgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTa                  <  2:2110577/91‑1 (MQ=255)

                                                                          tgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTa                  >  2:3116567/1‑91 (MQ=255)

                                                                          tgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTa                  >  1:3614448/1‑91 (MQ=255)

                                                                           gCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaa                 >  1:605466/1‑91 (MQ=255)

                                                                            ctagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaag                <  2:469988‑M2/77‑1 (MQ=255)

                                                                              agcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaagaa              >  1:3065463‑M2/13‑91 (MQ=255)

                                                                                 aagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTa           <  2:766349‑M2/82‑1 (MQ=255)

                                                                                 aagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTa           <  2:3071184‑M2/82‑1 (MQ=255)

                                                                                 aagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTa           <  2:3659126‑M2/82‑1 (MQ=255)

                                                                                 aagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTa           >  1:1656907‑M2/10‑91 (MQ=255)

                                                                                   gcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATc         >  1:1168362‑M2/8‑91 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTTATCTGCCATCTCTAAGAAGTATcc        >  2:2478115‑M2/7‑91 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATcc        <  2:323356‑M2/85‑1 (MQ=255)

                                                                                     gctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCt       <  1:555515‑M2/86‑1 (MQ=255)

                                                                                     gctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCt       <  1:1254019‑M2/86‑1 (MQ=255)

                                                                                       tttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGt     >  1:1784061‑M2/4‑91 (MQ=255)

                                                                                        ttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGtc    >  2:340211‑M2/3‑91 (MQ=255)

                                                                                         tTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGtct   <  1:1843079‑M2/90‑1 (MQ=255)

                                                                                          tCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCGACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGtctc  >  2:3470380/1‑91 (MQ=255)

AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGTCTC  >  USA300TCH1516_ALE/2455705‑2455885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.