BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2679992 =	218 (1.070)	21 (0.130)	8/130	NT	10.2%	intergenic (+44/+716)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein
*	?	USA300TCH1516_ALE	2681425 =	193 (1.170)	21 (0.130)	8/130	NT	10.2%	intergenic (‑460/+119)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 328 total aligned reads displayed.

TCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACT  >  USA300TCH1516_ALE/2681335‑2681515

tCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACg                                                                                            <  1:476417/91‑1 (MQ=255)

 ccAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGa                                                                                           <  1:1268653/91‑1 (MQ=255)

  cAAATTTGAATCATATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGaa                                                                                          <  2:3379050/91‑1 (MQ=255)

     aTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                                       <  1:3202024/91‑1 (MQ=255)

     aTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGc                                                                                       >  1:2383766/1‑91 (MQ=255)

      tttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCt                                                                                      <  2:1061231/91‑1 (MQ=255)

       ttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCtt                                                                                     <  1:2328163/91‑1 (MQ=255)

       ttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATGAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCtt                                                                                     <  2:3000926/91‑1 (MQ=255)

         gAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCa                                                                                   <  1:1907434/91‑1 (MQ=255)

           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                                 <  2:2583388/91‑1 (MQ=255)

           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                                 >  1:2240067/1‑91 (MQ=255)

           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                                 >  2:1157681/1‑91 (MQ=255)

           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                                 <  2:626481/91‑1 (MQ=255)

           aTCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAt                                                                                 >  1:995917/1‑91 (MQ=255)

            tCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAtt                                                                                <  2:1460112/91‑1 (MQ=255)

             ccTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAAttt                                                                               >  1:2580505/1‑91 (MQ=255)

               tataATGTATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                                             <  1:1973464/91‑1 (MQ=255)

               tataATGAATTTGTCTCATGAAGGAGTTATTTACTTTTCATTAGACTGATTTACTAATCTAAAAACTTCTATCACGAACGCTTCAATTTcc                                                                             <  2:3021885/91‑1 (MQ=255)

               tataATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                                             <  1:330141/91‑1 (MQ=255)

               tataATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                                             <  1:55131/91‑1 (MQ=255)

                    tGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGtct                                                                        >  2:1612933/1‑89 (MQ=255)

                     gAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATg                                                                       <  2:2024792/91‑1 (MQ=255)

                        ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                                    <  2:2438991/91‑1 (MQ=255)

                        ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGAGTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                                    >  2:3249288/1‑91 (MQ=255)

                        agtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                                    >  1:2105227‑M1/52‑91 (MQ=255)

                           ttacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGtgtg                                                                 <  1:395054‑M2/28‑1 (MQ=255)

                            tctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                                >  1:390455/1‑91 (MQ=255)

                            tctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                                <  1:2657677/91‑1 (MQ=255)

                             ctcATGAAGAAGTTATTTACTTTTCATTAGACTGCTTTACTAATCAAACAACTTCTATCACGAACGCCTCCATTTCCTGTCTGTGCGTGAt                                                               >  2:3509119/1‑91 (MQ=21)

                             ctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAt                                                               >  1:146380/1‑91 (MQ=255)

                                tcagtccatcgtagcgcttagataaattaatatgaacaaaaatAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGa                                                            >  1:3092146‑M1/44‑91 (MQ=255)

                                gcaatttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGa                                                            <  2:2669738‑M2/33‑1 (MQ=255)

                                aTGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGa                                                            <  1:1285563/91‑1 (MQ=255)

                                   atttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGt                                                         <  1:3650164‑M2/36‑1 (MQ=255)

                                   aagaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGt                                                         <  2:2056398/91‑1 (MQ=255)

                                    tttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtt                                                        <  1:2468308‑M2/37‑1 (MQ=255)

                                    tttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtt                                                        <  2:2191440‑M2/37‑1 (MQ=255)

                                    agaagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtt                                                        <  2:1905477/91‑1 (MQ=255)

                                     ttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttt                                                       <  2:3318634‑M2/38‑1 (MQ=255)

                                      aagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtttt                                                      <  1:787449/91‑1 (MQ=255)

                                      aagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtttt                                                      <  2:2734886/91‑1 (MQ=255)

                                      aagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtttt                                                      <  2:2104462/91‑1 (MQ=255)

                                      aagTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtttt                                                      >  1:1155550/1‑91 (MQ=255)

                                      aagTTATGTACTTTTCATTAGACTGATTTACTAATCAGTAAACTTCTATCGCGAACGCGTCAGTTTCCTGTATGCGTGTGATAGATGtttt                                                      <  2:3757239/91‑1 (MQ=18)

                                       agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                                     >  1:3257551/1‑91 (MQ=255)

                                       agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                                     <  2:2932742/91‑1 (MQ=255)

                                       agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                                     >  1:1576397/1‑91 (MQ=255)

                                       agTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                                     <  2:727132/91‑1 (MQ=255)

                                               aCTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGt                                             >  1:710292/1‑91 (MQ=255)

                                                 ttttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTCGTTc                                           <  1:385391/91‑1 (MQ=255)

                                                  tttCATTAGACTGATTTACTAATCAAAAAACTTCTATCATGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCa                                          <  1:897932/91‑1 (MQ=255)

                                                  tttCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCa                                          >  2:3821253/1‑91 (MQ=255)

                                                     cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                                       <  1:2184821/91‑1 (MQ=255)

                                                     cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                                       <  2:911729/91‑1 (MQ=255)

                                                     cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                                       >  2:2596265/1‑91 (MQ=255)

                                                     cATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCatat                                       >  1:3283162/1‑91 (MQ=255)

                                                      aTTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTCTGATAGAAGTTTTTATTTTTGTTCATAtt                                      >  1:3168623/1‑91 (MQ=255)

                                                        tAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTaa                                    <  2:1209666/91‑1 (MQ=255)

                                                        tAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTaa                                    >  1:2768147/1‑91 (MQ=255)

                                                         aGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAt                                   <  2:3381519/91‑1 (MQ=255)

                                                          gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAtt                                  >  1:963867/1‑91 (MQ=255)

                                                          gACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAAtt                                  >  1:2591909/1‑91 (MQ=255)

                                                            cTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTa                                <  1:3452258/91‑1 (MQ=255)

                                                            cTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTa                                >  1:597210/1‑91 (MQ=255)

                                                              gATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATc                              >  2:1742212/1‑91 (MQ=255)

                                                                  tACTAATCAAAAAGCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGGGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg                          <  2:252867/91‑1 (MQ=255)

                                                                  tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg                          <  2:2299783/91‑1 (MQ=255)

                                                                  tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAg                          <  1:1456759/91‑1 (MQ=255)

                                                                   aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTTTTCTTATTAATTTATCTAAgc                         >  2:826496/1‑91 (MQ=255)

                                                                   aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAgc                         <  1:2615876/91‑1 (MQ=255)

                                                                    cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTTTTCTTTTTAATTTATCTAAgcg                        >  2:413517/1‑91 (MQ=255)

                                                                       aTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTa                     <  2:2172645/91‑1 (MQ=255)

                                                                        tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTAc                    >  1:3819619/1‑91 (MQ=255)

                                                                        tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTAc                    >  2:2507516/1‑91 (MQ=255)

                                                                         cAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACg                   >  2:285110/1‑91 (MQ=255)

                                                                          aaaaaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGa                  <  1:183995/91‑1 (MQ=255)

                                                                            aaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATg                >  2:2664525‑M2/15‑91 (MQ=255)

                                                                            aaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCACATTAATTTATCTAAGCGCTACGATg                >  1:3690501‑M2/15‑91 (MQ=255)

                                                                              aacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGga              >  1:1702645‑M2/13‑91 (MQ=255)

                                                                                cttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgact            <  2:1300934‑M2/81‑1 (MQ=255)

                                                                                cttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgact            >  1:228036‑M2/11‑91 (MQ=255)

                                                                                cttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgact            >  2:3147941‑M2/11‑91 (MQ=255)

                                                                                 ttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactg           <  2:547397‑M2/82‑1 (MQ=255)

                                                                                  tctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactga          <  1:1053180‑M2/83‑1 (MQ=255)

                                                                                  tctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactga          <  2:1953972‑M2/83‑1 (MQ=255)

                                                                                   ctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATggactgaa         >  2:3925498‑M2/8‑90 (MQ=255)

                                                                                   ctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgac         >  2:2734268‑M2/8‑91 (MQ=255)

                                                                                   ctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgac         >  1:824538‑M2/8‑91 (MQ=255)

                                                                                     atcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACtt       <  2:3606856‑M2/86‑1 (MQ=255)

                                                                                     aTCACGAACGCTACAATATCCTGTATGCGTGCGATAGAAGTTTTTATTACTGTTCATATTAATTTATCTCAGCGCTACGATGGACTGACtt       >  2:3086784/1‑91 (MQ=25)

                                                                                      tcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa      <  1:2939173‑M2/87‑1 (MQ=255)

                                                                                      tcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa      <  1:1490393‑M2/87‑1 (MQ=255)

                                                                                       cacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa     <  1:3394657‑M2/88‑1 (MQ=255)

                                                                                       cacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa     <  1:3726590‑M2/88‑1 (MQ=255)

                                                                                       cacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa     <  1:561886‑M2/88‑1 (MQ=255)

                                                                                       cacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaa     >  2:134481‑M2/4‑91 (MQ=255)

                                                                                       cacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATGTATCTAAGCGCTACGATGGACTGACTTaa     <  2:3446227‑M2/88‑1 (MQ=255)

                                                                                        acGAACGCTTCACTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaaa    >  1:3036814‑M2/3‑91 (MQ=255)

                                                                                        acGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaaa    >  1:1755733‑M2/3‑91 (MQ=255)

                                                                                          gAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACt  >  1:205790/1‑91 (MQ=255)

TCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACT  >  USA300TCH1516_ALE/2681335‑2681515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.