BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2857675 =	196 (0.960)	5 (0.030)	4/140	NT	3.0%	intergenic (+71/‑172)	nixA/nhoA	High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase
*	?	USA300TCH1516_ALE	2857737 =	157 (0.880)	5 (0.030)	4/140	NT	3.0%	intergenic (+133/‑110)	nixA/nhoA	High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 267 total aligned reads displayed.

GACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAA  >  USA300TCH1516_ALE/2857647‑2857827

gACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAt                                                                                            >  1:3896771/1‑91 (MQ=255)

gACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAt                                                                                            >  2:2662169/1‑91 (MQ=255)

gACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAt                                                                                            <  2:375943/91‑1 (MQ=255)

 acacCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAtt                                                                                           >  2:3871071/1‑91 (MQ=255)

    cccTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAttttt                                                                                        >  2:1178069/1‑91 (MQ=255)

    cccTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAttttt                                                                                        <  1:2167999/91‑1 (MQ=255)

     ccTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTc                                                                                       <  2:2928685/91‑1 (MQ=255)

     ccTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATATTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTc                                                                                       <  2:3473268/91‑1 (MQ=255)

      cTGCACACTTCTTCCATTATGCTACTCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCt                                                                                      <  1:3677158/91‑1 (MQ=255)

      cTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCt                                                                                      <  1:2066725/91‑1 (MQ=255)

        gCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAt                                                                                    <  2:2932230/91‑1 (MQ=255)

        gCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAt                                                                                    <  1:812067/91‑1 (MQ=255)

         cacaCTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAtt                                                                                   >  2:3032686/1‑91 (MQ=255)

          acacTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAttt                                                                                  >  2:311041/1‑91 (MQ=255)

            acTTCTTGCATTATGCTACGCTCTCAGTAGTCATCTGTAAATCGTTTCTTTTAGAGATGACTTCATTCTGAGAGCGAATTTTTCTATTTaa                                                                                >  2:3672510/1‑91 (MQ=255)

            acTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTaa                                                                                >  1:271606/1‑91 (MQ=255)

             cttcttCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTaaa                                                                               <  1:899420/91‑1 (MQ=255)

              ttcttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTaaaa                                                                              >  2:2524888/1‑91 (MQ=255)

              ttcttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTaaaa                                                                              >  1:1438581/1‑91 (MQ=255)

               tcttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAAt                                                                             >  2:1304306/1‑91 (MQ=255)

                cttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATg                                                                            <  1:3559992/91‑1 (MQ=255)

                 ttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGt                                                                           >  2:1058034/1‑91 (MQ=255)

                 ttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGt                                                                           <  1:1724591/91‑1 (MQ=255)

                 ttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGt                                                                           <  1:264037/91‑1 (MQ=255)

                    cATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTAtt                                                                        <  2:2817621/91‑1 (MQ=255)

                     aTTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTAttt                                                                       <  1:2098571/91‑1 (MQ=255)

                      ttATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTa                                                                      <  2:3311154/91‑1 (MQ=255)

                          gCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCa                                                                  <  2:1753456/91‑1 (MQ=255)

                          gCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCa                                                                  <  1:1132896/91‑1 (MQ=255)

                           cTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCaa                                                                 <  2:146936/91‑1 (MQ=255)

                            TACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCaaa                                                                <  2:1121535‑M1/91‑1 (MQ=255)

                            TACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCaaa                                                                <  2:1806459‑M1/91‑1 (MQ=255)

                             acgctctcaaaatgaagtcatctctaaaagaaacgatttaaagatgactactgagagcgtaTTTTTCTATTTAAAATGTATTTATCCaaaa                                                               >  2:3150978‑M2/62‑91 (MQ=255)

                             ACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCaaaa                                                               >  1:268588‑M1/1‑91 (MQ=255)

                              CGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAAt                                                              >  2:715155‑M1/1‑91 (MQ=255)

                              CGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAAt                                                              >  1:3161909‑M1/1‑91 (MQ=255)

                               GCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAAtt                                                             >  1:737589‑M1/1‑91 (MQ=255)

                                  CTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCaa                                                          >  1:2785222‑M1/1‑91 (MQ=255)

                                  CTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCaa                                                          >  2:1967933‑M1/1‑91 (MQ=255)

                                   TCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTACAATGTATTTATCCAAAATTCAAt                                                         <  2:3080635‑M1/91‑1 (MQ=255)

                                    cattagtCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATCTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATg                                                        >  2:769195/4‑91 (MQ=255)

                                    CAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATg                                                        >  1:3217821‑M1/1‑91 (MQ=255)

                                      gtagtCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCt                                                      >  1:3852873/1‑91 (MQ=255)

                                        agtCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCttt                                                    >  1:31402/1‑91 (MQ=255)

                                           catctctaaaagaaacgatttaaagatgacttcattttgagagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGa                                                 >  2:339285‑M2/48‑91 (MQ=255)

                                           cATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGa                                                 <  2:843031/91‑1 (MQ=255)

                                             tCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAt                                               >  1:65814/1‑91 (MQ=255)

                                              cTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAtt                                              <  1:3351155/91‑1 (MQ=255)

                                               tttAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAttt                                             >  2:2995972/1‑91 (MQ=255)

                                               tttAAATCGTTTCTTTTAGAGATGACTTCATTTAGCGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAttt                                             <  2:2747518/91‑1 (MQ=255)

                                                ttAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTa                                            >  1:3776278/1‑91 (MQ=255)

                                                ttAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTa                                            >  1:1302300/1‑91 (MQ=255)

                                                  aaaTCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTaaa                                          >  2:3422803/1‑91 (MQ=255)

                                                  aaaTCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTaaa                                          >  2:1368993/1‑91 (MQ=255)

                                                  aaaTCGTTTCTTTTAGAGATGACTTCATCTTGAGAGCGTATTTTTCTCTTTAAAATGTATTTCTCCAAAATTCAATGCTTTCGAATTTaaa                                          >  2:519574/1‑91 (MQ=255)

                                                    aTCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAt                                        <  1:1194070/91‑1 (MQ=255)

                                                     tCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAtt                                       <  2:3523814/91‑1 (MQ=255)

                                                     tCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAtt                                       >  1:2519118/1‑91 (MQ=255)

                                                     tCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAtt                                       >  2:2315476/1‑91 (MQ=255)

                                                     tCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAtt                                       >  2:2690442/1‑91 (MQ=255)

                                                      cGTTTCTTTTAGAGATTACTTCAGTTTGAGAGCGTATTTGTCTATTTAAATTGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAttt                                      <  2:3246386/91‑1 (MQ=255)

                                                      cGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAttt                                      <  2:2402307/91‑1 (MQ=255)

                                                       gTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTc                                     <  1:1408893/91‑1 (MQ=255)

                                                       gTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTc                                     <  1:2975105/91‑1 (MQ=255)

                                                        tttCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCa                                    <  1:557617/91‑1 (MQ=255)

                                                           cTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTa                                 >  2:2631458/1‑91 (MQ=255)

                                                                agagATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCt                            >  2:1067597/1‑91 (MQ=255)

                                                                agagATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCt                            >  1:1883245/1‑91 (MQ=255)

                                                                 gagaTGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTg                           >  1:3497501/1‑91 (MQ=255)

                                                                 gagaTGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTg                           >  2:732732/1‑91 (MQ=255)

                                                                 gagaTGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTg                           <  1:694855/91‑1 (MQ=255)

                                                                   gaTGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGtt                         >  2:362424/1‑91 (MQ=255)

                                                                     tGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTa                       <  2:2213650/91‑1 (MQ=255)

                                                                      gACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTaa                      <  1:3420695/91‑1 (MQ=255)

                                                                       aCTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTaaa                     >  1:767186/1‑91 (MQ=255)

                                                                        cTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTataa                    >  2:1531842/1‑91 (MQ=255)

                                                                         ttCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAAt                   >  1:2003972/1‑91 (MQ=255)

                                                                          tCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAAtt                  >  1:2305186/1‑91 (MQ=255)

                                                                           cATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAAttt                 >  2:472636/1‑91 (MQ=255)

                                                                            aTTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTa                >  2:2805512/1‑91 (MQ=255)

                                                                            aTTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTa                >  2:2297417/1‑91 (MQ=255)

                                                                             ttttGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTaa               >  1:635978/1‑91 (MQ=255)

                                                                             ttttGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTaa               <  1:2851844/91‑1 (MQ=255)

                                                                             ttttGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTaa               >  1:2331851/1‑91 (MQ=255)

                                                                             ttttGAGAGCGTAGTTTTCTATTTAAAATGTATTTATCCAAAAGTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTaa               <  1:3955046/91‑1 (MQ=255)

                                                                              tttGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAt              >  1:1648600/1‑91 (MQ=255)

                                                                              tttGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAt              <  2:1299002/91‑1 (MQ=255)

                                                                                 gagagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATtat           <  2:2367374‑M2/82‑1 (MQ=255)

                                                                                 gagagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATtat           >  2:3934067‑M2/10‑91 (MQ=255)

                                                                                 gagagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATtat           >  1:2230691‑M2/10‑91 (MQ=255)

                                                                                  agagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATtata          >  2:1558331‑M2/9‑91 (MQ=255)

                                                                                  agagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATtata          >  1:2903051‑M2/9‑91 (MQ=255)

                                                                                   gagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATaa         >  2:2076111‑M2/8‑91 (MQ=255)

                                                                                    agcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAAt        <  1:2412751‑M2/85‑1 (MQ=255)

                                                                                     gcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATc       >  1:2962188‑M2/6‑91 (MQ=255)

                                                                                      cgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCt      <  1:2061796‑M2/87‑1 (MQ=255)

                                                                                       gtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCtt     <  2:1336122‑M2/88‑1 (MQ=255)

                                                                                       gtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCtt     >  2:875056‑M2/4‑91 (MQ=255)

                                                                                       gtaTTTTTCTATATAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAAGCtt     >  1:3056966‑M2/4‑91 (MQ=255)

                                                                                         aTTTTTCAATTTAAAATGTATTTATCCAAAATTCAAAGCTTTCGAATATAAAATTTCAGTATTTCTACTTAAAATTTAATTATAATCTTTa   >  2:3682080‑M2/2‑91 (MQ=255)

GACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAA  >  USA300TCH1516_ALE/2857647‑2857827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.