New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 3772 =705 (0.770)75 (0.090) 18/140 NT 10.8% intergenic (+388/‑96) USA300HOU_pUSA300HOUMR0005/USA300HOU_pUSA300HOUMR0006 hypothetical protein/hypothetical protein
?CP000731 3805 = 628 (0.790)intergenic (+421/‑63) USA300HOU_pUSA300HOUMR0005/USA300HOU_pUSA300HOUMR0006 hypothetical protein/hypothetical protein

Only 100 of 1033 total aligned reads displayed.

ATCACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACTTTTTC  >  CP000731/3715‑3895
                                                                                          |                                                                                          
 tCACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAGAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttc                                                                                           <  2:3250766/91‑1 (MQ=255)
 tCACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttc                                                                                           <  1:1749791/91‑1 (MQ=255)
   aCCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttctt                                                                                         <  2:2987202/91‑1 (MQ=255)
         aaaTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATAc                                                                                   >  2:1744093/1‑91 (MQ=255)
         aaaTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATAc                                                                                   >  2:3555772/1‑91 (MQ=255)
         aaaTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATAc                                                                                   >  1:3838029/1‑91 (MQ=255)
          aaTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACg                                                                                  >  1:1491671/1‑91 (MQ=255)
            tCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTTCCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGt                                                                                <  1:3469939/91‑1 (MQ=255)
            tCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGt                                                                                >  2:1286258/1‑91 (MQ=255)
            tCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGt                                                                                <  2:463952/91‑1 (MQ=255)
             cTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTc                                                                               <  1:2085913/91‑1 (MQ=255)
              tttAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCt                                                                              >  1:1302507/1‑91 (MQ=255)
               ttAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCta                                                                             >  2:717691/1‑91 (MQ=255)
               ttAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCta                                                                             <  1:3730826/91‑1 (MQ=255)
                tAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtat                                                                            >  2:1439067/1‑91 (MQ=255)
                  aaaTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtattt                                                                          <  1:2583878/91‑1 (MQ=255)
                  aaaTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtattt                                                                          <  2:74174/91‑1 (MQ=255)
                  aaaTGCACTCTTAAAATTCAAATAAAGAGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtattt                                                                          <  2:3182536/91‑1 (MQ=255)
                   aaTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtattta                                                                         <  1:3341198/91‑1 (MQ=255)
                   aaTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtattta                                                                         <  2:1135177/91‑1 (MQ=255)
                    aTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtatttat                                                                        <  2:2575305/91‑1 (MQ=255)
                    aTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtatttat                                                                        <  1:541452/91‑1 (MQ=255)
                    aTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtatttat                                                                        >  2:337570/1‑91 (MQ=255)
                     tGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtatttatt                                                                       >  2:1680354/1‑91 (MQ=255)
                     tGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtatttatt                                                                       >  2:2402234/1‑91 (MQ=255)
                      gCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTctttattt                                                                      >  1:1376774/1‑91 (MQ=255)
                      gCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTatctattt                                                                      >  2:80487/1‑91 (MQ=255)
                       cccTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTAtttt                                                                     >  1:671188/1‑91 (MQ=255)
                       cccTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTAtttt                                                                     >  1:1059174/1‑91 (MQ=255)
                       cccTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTAtttt                                                                     >  1:1120713/1‑91 (MQ=255)
                        ccTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTAttttt                                                                    <  2:1838441/91‑1 (MQ=255)
                        ccTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTAttttt                                                                    >  2:549336/1‑91 (MQ=255)
                         ctctTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTtttc                                                                   >  1:774891/1‑91 (MQ=255)
                           ctTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTtttctt                                                                 >  1:1956808/1‑91 (MQ=255)
                           ctTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTtttctt                                                                 >  1:1012438/1‑91 (MQ=255)
                             tAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTtttctttc                                                               <  1:2675099/91‑1 (MQ=255)
                               aaaTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGa                                                             >  2:250838/1‑91 (MQ=255)
                                aaTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGAc                                                            >  1:2959305/1‑91 (MQ=255)
                                 aTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACg                                                           >  2:85812/1‑91 (MQ=255)
                                 aTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACg                                                           >  1:842077/1‑91 (MQ=255)
                                  ttCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGc                                                          <  1:2621059/91‑1 (MQ=255)
                                   tCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGcc                                                         <  1:237896/91‑1 (MQ=255)
                                   tCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGcc                                                         <  2:3710350/91‑1 (MQ=255)
                                    cAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCg                                                        >  2:913729/1‑91 (MQ=255)
                                     aaaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGt                                                       <  2:307530/91‑1 (MQ=255)
                                     aaaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGt                                                       <  2:1336947/91‑1 (MQ=255)
                                     aaaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGt                                                       <  2:1498943/91‑1 (MQ=255)
                                      aaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTa                                                      <  2:1983942/91‑1 (MQ=255)
                                      aaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTa                                                      >  2:765765/1‑91 (MQ=255)
                                      aaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTa                                                      >  1:1564627/1‑91 (MQ=255)
                                      aaaTAAGGGCATAAAAAATAAAAGCGACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTa                                                      <  2:3418135/91‑1 (MQ=255)
                                           aGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTAtcgtc                                                 >  2:3853254/1‑91 (MQ=255)
                                              gCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGAt                                              >  1:39128/1‑91 (MQ=255)
                                               cATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATg                                             <  2:3107441/91‑1 (MQ=255)
                                                aTAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGt                                            <  2:377475/91‑1 (MQ=255)
                                                aTAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGt                                            <  2:1211210/91‑1 (MQ=255)
                                                  aaaaaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTaa                                          >  1:3021405/1‑91 (MQ=255)
                                                      aaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCa                                      >  2:20631/1‑91 (MQ=255)
                                                      aaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCa                                      >  1:2480953/1‑91 (MQ=255)
                                                       aTAAAAGTTTCCCCATTTAATGTGTGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaa                                     <  2:220738/91‑1 (MQ=255)
                                                       aTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaa                                     <  2:2325895/91‑1 (MQ=255)
                                                        tAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaa                                    >  2:2134521/1‑91 (MQ=255)
                                                          AAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaaa                                  <  1:2889723‑M1/91‑1 (MQ=255)
                                                           AAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaaaa                                 <  1:251584‑M1/91‑1 (MQ=255)
                                                           AAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaaaa                                 <  2:403692‑M1/91‑1 (MQ=255)
                                                            AGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTACTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAg                                <  1:3158135‑M1/91‑1 (MQ=255)
                                                              ctacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGtt                              >  2:2771048‑M2/29‑91 (MQ=255)
                                                              CTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGtt                              >  2:2930069‑M1/1‑91 (MQ=255)
                                                               tacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTa                             >  2:3486514‑M2/28‑91 (MQ=255)
                                                                acctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTAt                            >  1:1431371‑M2/27‑91 (MQ=255)
                                                                ACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTAt                            >  1:425968‑M1/1‑91 (MQ=255)
                                                                 cctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATg                           >  1:616771‑M2/26‑91 (MQ=255)
                                                                 cctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATg                           >  1:2706251‑M2/26‑91 (MQ=255)
                                                                 CCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATg                           <  1:1649036‑M1/91‑1 (MQ=255)
                                                                  ctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATgg                          >  1:1247987‑M2/25‑91 (MQ=255)
                                                                   tcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATggg                         >  1:3625301‑M2/24‑91 (MQ=255)
                                                                   ccAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATggg                         <  1:2268085/91‑1 (MQ=255)
                                                                     actttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCt                       >  1:3765481‑M2/22‑91 (MQ=255)
                                                                     aGATAAAGTGAGGTAGCTGTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCt                       <  2:2713521/91‑1 (MQ=255)
                                                                      gATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCta                      >  1:1818121/1‑91 (MQ=255)
                                                                       aTAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCtat                     >  2:1908777/1‑91 (MQ=255)
                                                                        ttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCtata                    >  1:3529019‑M2/19‑91 (MQ=255)
                                                                        tAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCtata                    <  1:477160/91‑1 (MQ=255)
                                                                        tAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCtata                    <  1:1200432/91‑1 (MQ=255)
                                                                           aGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAAt                 >  1:935846/1‑91 (MQ=255)
                                                                             tGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCt               >  2:3632918/1‑91 (MQ=255)
                                                                              gAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAATGTTATGTCCTATAAATCTa              >  2:2257952/1‑91 (MQ=255)
                                                                               aGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCCTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTAc             <  1:3299138/91‑1 (MQ=255)
                                                                                ggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACa            <  2:607585‑M2/81‑1 (MQ=255)
                                                                                 gtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAAtctaaat           <  1:2167540‑M2/82‑4 (MQ=255)
                                                                                 gtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACAt           >  1:3099253‑M2/10‑91 (MQ=255)
                                                                                    gcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCAc        >  2:265382‑M2/7‑91 (MQ=255)
                                                                                    gcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCAc        <  2:1617112‑M2/85‑1 (MQ=255)
                                                                                     cttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACt       >  1:2775989‑M2/6‑91 (MQ=255)
                                                                                     cttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACt       <  2:1552526‑M2/86‑1 (MQ=255)
                                                                                     cttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACt       <  1:999430‑M2/86‑1 (MQ=255)
                                                                                        ttTCTTTCATACGGTCTATTTATTTTTCTTTCGTCGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACtttt    <  1:3237044‑M2/89‑1 (MQ=255)
                                                                                        ttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACtttt    >  2:2858341‑M2/3‑91 (MQ=255)
                                                                                         tTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACttttt   <  1:2233193‑M2/90‑1 (MQ=255)
                                                                                          tctttcATACGTTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACTTTTTc  <  2:105060/91‑1 (MQ=255)
                                                                                          |                                                                                          
ATCACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACTTTTTC  >  CP000731/3715‑3895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.