BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	987 =	980 (0.470)	192 (0.110)	19/138	NT	19.2%	pseudogene (708/709 nt)	USA300HOU_RS14890	replication protein
*	?	NC_012417	1013 =	777 (0.430)	192 (0.110)	19/138	NT	19.2%	coding (182/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 2422 total aligned reads displayed.

ACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTG  >  NC_012417/923‑1103

 cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttt                                                                                           <  2:2693313/91‑1 (MQ=255)

 cGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttt                                                                                           >  1:1771382/1‑91 (MQ=255)

  gaagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCttttt                                                                                          >  2:127012/1‑91 (MQ=255)

   aagaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCtttttt                                                                                         <  1:932401/91‑1 (MQ=255)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        <  2:160451/91‑1 (MQ=255)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        <  1:2004774/91‑1 (MQ=255)

    agaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttg                                                                                        >  2:1473028/1‑91 (MQ=255)

    agaagaaAAAGCACAGACCATTACCGCAATTTGGAGTTTCGAAAGGCAGAATTATTATTTAAGTCATTAGTGTTGACTAATGTCTTTTttg                                                                                        <  2:3947157/91‑1 (MQ=17)

     gaagaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTttgt                                                                                       <  1:3317337/91‑1 (MQ=255)

        gaaAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGa                                                                                    >  1:577680/1‑91 (MQ=255)

         aaaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAt                                                                                   >  2:1802180/1‑91 (MQ=255)

         aaaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAt                                                                                   >  2:2045637/1‑91 (MQ=255)

         aaaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAt                                                                                   <  1:3026379/91‑1 (MQ=255)

         aaaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAt                                                                                   >  1:725436/1‑91 (MQ=255)

          aaaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAtt                                                                                  >  1:868705/1‑91 (MQ=255)

           aaaGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttt                                                                                 <  1:2196043/91‑1 (MQ=255)

             aGCACATTCAATTACCGCAATTTAGAATTTCGAAAATCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAttttt                                                                               <  2:166599/91‑1 (MQ=255)

                acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtat                                                                            <  1:2412499/91‑1 (MQ=255)

                acaTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtat                                                                            >  1:3373048/1‑91 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  2:1398757/1‑91 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  1:3868512/1‑91 (MQ=255)

                 caTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTtata                                                                           >  1:1683663/1‑91 (MQ=255)

                  aatCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaa                                                                          <  2:792909/89‑1 (MQ=255)

                  aTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaa                                                                          >  1:1849065/1‑91 (MQ=255)

                  aTTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATaa                                                                          >  2:3895924/1‑91 (MQ=255)

                          aCCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTAC                                                                  <  1:2262747‑M1/91‑1 (MQ=255)

                          aCCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTAC                                                                  <  2:1938140‑M1/91‑1 (MQ=255)

                          aCCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTAC                                                                  <  1:2947937‑M1/91‑1 (MQ=255)

                          aCCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTAC                                                                  <  1:2470325‑M1/91‑1 (MQ=255)

                           ccGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACT                                                                 >  1:507258‑M1/1‑91 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTTTTTTTTTTTTATTAAAAATTACTGTCT                                                             >  2:3611422‑M1/1‑91 (MQ=255)

                               aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTCATTTTTTATAAAAAAGTACTGTCT                                                             >  2:3685349‑M1/1‑91 (MQ=255)

                                 tttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTA                                                           <  2:448884‑M1/91‑1 (MQ=255)

                                 tttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTA                                                           >  1:397110‑M1/1‑91 (MQ=255)

                                  ttGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTAT                                                          <  1:1400392‑M1/91‑1 (MQ=255)

                                     gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTT                                                       <  2:3322952‑M1/91‑1 (MQ=255)

                                     gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTT                                                       <  2:2825827‑M1/91‑1 (MQ=255)

                                     gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTT                                                       <  2:951858‑M1/91‑1 (MQ=255)

                                     gAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTT                                                       >  1:1315484‑M1/1‑91 (MQ=255)

                                      aaTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTT                                                      >  1:1004424‑M1/1‑91 (MQ=255)

                                       aTTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTG                                                     >  1:2524743‑M1/1‑91 (MQ=255)

                                        tttCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGT                                                    >  2:3826643‑M1/1‑91 (MQ=255)

                                          tCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGA                                                  <  1:149077‑M1/91‑1 (MQ=255)

                                          tCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTATGA                                                  >  1:3182046‑M1/1‑91 (MQ=255)

                                           cGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAC                                                 <  1:1578624‑M1/91‑1 (MQ=255)

                                           agaAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTAAAAAAAAAAAAAAAAGTACTGTCTTATTTTTGTGAC                                                 <  2:2919029‑M1/90‑1 (MQ=255)

                                            gaggagcaaGGTTATGATTTAAGACATTAGTGGTGAGTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACA                                                <  2:2526770‑M1/87‑1 (MQ=255)

                                             aaaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaa                                               >  2:2753727/1‑91 (MQ=255)

                                              aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                              >  2:2436941/1‑91 (MQ=255)

                                               aaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAAt                                             >  1:3582989/1‑91 (MQ=255)

                                                aGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATg                                            <  2:2619707/91‑1 (MQ=255)

                                                 gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                                           >  2:2015913/1‑91 (MQ=255)

                                                  cAAACTTCTTATTTAAGCCATTAGTGTTGACTAATGTCTTTTTTGTTGATGTTTTATAAAAAAGTACTGTCTTATTTTTGTGTCAAATGCt                                          >  2:736270/1‑91 (MQ=21)

                                                   aaaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtg                                         <  1:2333602/91‑1 (MQ=255)

                                                    aaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt                                        <  1:3535924/91‑1 (MQ=255)

                                                    aaaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgt                                        <  1:1904675/91‑1 (MQ=255)

                                                      attattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTCCCTTATTTTTCTGACAAATGCtgtat                                      >  2:3422924/1‑91 (MQ=255)

                                                       ttattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagc                                     <  2:1883950‑M1/91‑12 (MQ=255)

                                                       ttattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatg                                     <  1:3094700/91‑1 (MQ=255)

                                                           taggtAAGCCATTAGCGTTGACTAATGTCTGTTTCGTGCAACACTTATAAAACAGTACTGTCTCAGTTTTGTGACAAATGCTGTATGGAgt                                 <  2:59116/87‑1 (MQ=12)

                                                           tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGt                                 >  1:3750633‑M2/1‑90 (MQ=255)

                                                           tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGCATGTAGt                                 <  1:1962360‑M2/91‑2 (MQ=255)

                                                             tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                               >  1:2665851‑M2/1‑88 (MQ=255)

                                                               tgAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTca                             >  2:864636‑M1/3‑91 (MQ=255)

                                                               tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcatttgtca                             <  1:3819911‑M1/91‑20 (MQ=255)

                                                               tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGAAGtaaaa                             >  2:3754970‑M2/1‑86 (MQ=255)

                                                                aagacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcac                            >  2:2261151‑M2/27‑91 (MQ=255)

                                                                 AGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                           >  2:2112550‑M1/1‑91 (MQ=255)

                                                                  gacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa                          >  1:2728748‑M2/25‑91 (MQ=255)

                                                                    cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                        >  1:1060540‑M2/23‑91 (MQ=255)

                                                                    cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                        >  1:1228452‑M2/23‑91 (MQ=255)

                                                                    cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                        >  1:3258164‑M2/23‑91 (MQ=255)

                                                                     attagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaaa                       >  1:1631749‑M2/22‑91 (MQ=255)

                                                                     ATTAGTGTTGACTAATGTCTTTTTTTTTTATTTTTTATAAAAAAGTACTGTCTTATTTTTATGTCAAATGCTTGATGTAGTGTctcaacaa                       <  2:1331886‑M1/91‑4 (MQ=255)

                                                                      TTAGTGTTGACTAATGTCTTTTTTGTGGATTTTTTATAAAAAAGTACTGTCTTAGTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                      >  2:1118718‑M1/1‑91 (MQ=255)

                                                                       TAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATa                     >  2:348079‑M1/1‑91 (MQ=255)

                                                                        AGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAACAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                    <  2:3037313‑M1/91‑1 (MQ=255)

                                                                        AGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                    <  1:2884181‑M1/91‑1 (MQ=255)

                                                                        AGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                    >  2:1727369‑M1/1‑91 (MQ=255)

                                                                         gtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                   >  1:1161240‑M2/18‑91 (MQ=255)

                                                                         GTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                   <  1:2802263‑M1/91‑1 (MQ=255)

                                                                          TGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGa                  >  1:645802‑M1/1‑91 (MQ=255)

                                                                            ttGACTAAGGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagaca                <  2:2321977‑M2/91‑19 (MQ=255)

                                                                            aacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACa                >  2:647326‑M2/15‑91 (MQ=255)

                                                                             tGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa               <  1:2145958/91‑1 (MQ=255)

                                                                             acactaatgtcttTTTTGTTTATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa               >  2:3545248‑M2/14‑91 (MQ=255)

                                                                             acactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa               >  2:1033683‑M2/14‑91 (MQ=255)

                                                                              gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa              >  2:1535353/1‑91 (MQ=255)

                                                                               actaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAAc             >  1:3457745‑M2/12‑91 (MQ=255)

                                                                                ctaatgtcttTTTTGTTGATTTTTTATAAGAAAGTACTGTCGTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg            <  2:3215267‑M2/81‑1 (MQ=255)

                                                                                ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg            <  2:1193397‑M2/81‑1 (MQ=255)

                                                                                ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg            <  1:2069811‑M2/81‑1 (MQ=255)

                                                                                 taatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc           <  1:3665516‑M2/82‑1 (MQ=255)

                                                                                 taatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc           <  2:3134394‑M2/82‑1 (MQ=255)

                                                                                  aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa          >  2:2184012‑M2/9‑91 (MQ=255)

                                                                                  aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa          <  1:2592824‑M2/83‑1 (MQ=255)

                                                                                    tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat        <  2:524059‑M2/85‑1 (MQ=255)

                                                                                      tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat      >  1:459114‑M2/5‑91 (MQ=255)

                                                                                         tTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATAtt   >  1:801660‑M2/2‑91 (MQ=255)

                                                                                          ttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatt  <  1:978622‑M1/91‑47 (MQ=255)

ACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTG  >  NC_012417/923‑1103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.