BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1057	604 (0.290)	50 (0.030)	16/124	NT	7.9%	coding (138/192 nt)	USA300HOU_RS15665	hypothetical protein
*	?	NC_012417	= 1071	705 (0.440)	50 (0.030)	16/124	NT	7.9%	coding (124/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 2209 total aligned reads displayed.

TTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAC  >  NC_012417/981‑1161

ttattTAAGAGATTAGTGTTGACAAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg                                                                                            <  2:1626581/91‑1 (MQ=255)

   tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                                                                                         <  1:13342‑M2/91‑4 (MQ=255)

   tgtaaGACAGTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCGGATTTTTGTGACAAATGCTGTATGTAGtgt                                                                                         >  2:3660278‑M2/3‑88 (MQ=255)

    ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc                                                                                        >  1:3848424‑M2/1‑87 (MQ=255)

     tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                       >  1:2326641‑M2/1‑86 (MQ=255)

     tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                       <  2:2000254‑M2/91‑6 (MQ=255)

     tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGAATTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                       >  2:2911927‑M2/1‑86 (MQ=255)

     gtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgttTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTca                                                                                       <  1:2268417‑M2/37‑1 (MQ=255)

       AGACATTGGGGTTGACTAATGTCTTTTTTGTGGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                                     >  2:2213889‑M1/1‑91 (MQ=255)

        gacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa                                                                                    >  1:3499687‑M2/25‑91 (MQ=255)

        gacattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa                                                                                    >  2:117250‑M2/25‑91 (MQ=255)

        GACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAGAAGTACTGGCTTCTTTTTGTGACAAATGCTGTATGTAGTGTCACaa                                                                                    >  1:3158233‑M1/1‑91 (MQ=255)

         acattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaa                                                                                   >  1:512065‑M2/24‑91 (MQ=255)

         acattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGAAAAATGCTGTATGTAGTGTCACaaa                                                                                   >  2:1704661‑M2/24‑91 (MQ=255)

          cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaa                                                                                  >  1:3565206‑M2/23‑91 (MQ=255)

          cattagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTCACAACTGCTGTATGTAGTGTCacaata                                                                                  >  2:1478046‑M2/23‑89 (MQ=255)

           ATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaaa                                                                                 >  2:3919676‑M1/1‑91 (MQ=255)

            ttagtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                                                >  1:1678563‑M2/21‑91 (MQ=255)

            TTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                                                >  1:2004045‑M1/1‑91 (MQ=255)

            TTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                                                >  1:3659961‑M1/1‑91 (MQ=255)

            TTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                                                <  1:568604‑M1/91‑1 (MQ=255)

             TAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATa                                                                               >  1:1887173‑M1/1‑91 (MQ=255)

              agtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                                              >  2:2360072‑M2/19‑91 (MQ=255)

              agtcaacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                                              >  2:1320032‑M2/19‑91 (MQ=255)

              AGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAACAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                                              <  2:3037313‑M1/91‑1 (MQ=255)

              AGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGATGTATGTAGTGTCACAAAAATaa                                                                              <  2:530886‑M1/91‑1 (MQ=255)

               GTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                                                                             <  2:3301905‑M1/91‑1 (MQ=255)

                TGTTGACTAATGTCTTTTTTGTTTATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTATTGTCACAAAAATAAGa                                                                            <  2:284694‑M1/91‑1 (MQ=255)

                 gtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                                                                           <  2:1543358‑M2/91‑18 (MQ=255)

                 gtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                                                                           <  2:2136288‑M2/91‑18 (MQ=255)

                 caacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGAc                                                                           >  1:2721728‑M2/16‑91 (MQ=255)

                  ttGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTTACATATGCACTATGTAGtgacacaaaaataagaca                                                                          <  2:3427652‑M2/91‑19 (MQ=255)

                  ttGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagaca                                                                          >  1:2915941‑M2/1‑73 (MQ=255)

                   tGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa                                                                         <  2:2552170/91‑1 (MQ=255)

                      ctaatgtcttTTTTGTTGATTTTTTATAAGAAAGTACTGTCGTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg                                                                      <  2:3215267‑M2/81‑1 (MQ=255)

                      ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg                                                                      >  1:758632‑M2/11‑91 (MQ=255)

                        aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                                    <  2:1936479‑M2/83‑1 (MQ=255)

                         atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                                                   >  2:920265‑M2/8‑91 (MQ=255)

                         atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                                                   <  1:2057639‑M2/84‑1 (MQ=255)

                           gtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                                                 >  1:1474711‑M2/6‑91 (MQ=255)

                            tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                <  1:1270631‑M2/87‑1 (MQ=255)

                            tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                >  1:459114‑M2/5‑91 (MQ=255)

                             cttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTTACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatata                                                               >  2:1412528‑M2/4‑91 (MQ=255)

                             cttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatata                                                               <  1:1786700‑M2/88‑1 (MQ=255)

                              ttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat                                                              >  1:2170170‑M2/3‑91 (MQ=255)

                              ttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatatat                                                              >  2:782499‑M2/3‑91 (MQ=255)

                                ttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtg                                                            <  2:2500050/91‑1 (MQ=255)

                                ttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtg                                                            <  1:3805822/91‑1 (MQ=255)

                                ttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtg                                                            >  1:239991/1‑91 (MQ=255)

                                 tttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGt                                                           >  1:2989022‑M2/1‑90 (MQ=255)

                                    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATGAGACAAACGCAATATATTGtgtc                                                        <  1:1956122‑M2/91‑5 (MQ=255)

                                    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                        >  2:1230956‑M2/1‑87 (MQ=255)

                                     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                       <  1:894927‑M2/91‑6 (MQ=255)

                                     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                       >  2:3127112‑M2/1‑86 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     >  1:2855603‑M2/1‑84 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     >  1:1558596‑M2/1‑84 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     <  1:3420055‑M2/91‑8 (MQ=255)

                                        aTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaa                                                    >  1:408578‑M2/1‑83 (MQ=255)

                                         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                                   >  2:3844042‑M2/1‑82 (MQ=255)

                                           ttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaa                                                 <  2:206675‑M2/91‑12 (MQ=255)

                                              tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                              >  1:692482‑M2/1‑77 (MQ=255)

                                               ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataag                                             >  1:2798539‑M2/1‑76 (MQ=255)

                                               ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataag                                             <  1:2099751‑M2/91‑16 (MQ=255)

                                               ataAAAAAATACTGACTTAATTTTATAACAAATGCTGTATGTAGTGACACAAAAATAAGACAAACGCAATATAAAGTATAAAAAAAATAAg                                             <  2:3493073/91‑1 (MQ=18)

                                                taAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataaga                                            <  1:984217‑M2/91‑17 (MQ=255)

                                                taAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataaga                                            <  1:1743978‑M2/91‑17 (MQ=255)

                                                 aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                                           >  1:1162115‑M2/1‑74 (MQ=255)

                                                     tgcgttTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATa                                                                               <  2:465089‑M2/45‑1 (MQ=255)

                                                      aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                                      >  2:3555162‑M2/1‑69 (MQ=255)

                                                       gTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa                                     <  1:3217615/91‑1 (MQ=255)

                                                        tACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                    >  1:1845617/1‑91 (MQ=255)

                                                        tACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                    <  1:3090476/91‑1 (MQ=255)

                                                        tACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                                    <  1:1098182/91‑1 (MQ=255)

                                                         aCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                   >  1:3715512/1‑91 (MQ=255)

                                                          cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  <  2:3752728/91‑1 (MQ=255)

                                                          cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  >  1:1047457/1‑91 (MQ=255)

                                                          cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  <  1:1420743/91‑1 (MQ=255)

                                                          cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  >  1:3910295/1‑91 (MQ=255)

                                                          cTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  >  1:2510788/1‑91 (MQ=255)

                                                          cTGTCTTATTTTTGTGACAAATGCTGTAAGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCt                                  <  2:1849008/91‑1 (MQ=255)

                                                            gTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCttt                                >  2:621245/1‑91 (MQ=255)

                                                               ttATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTa                             >  2:2732474/1‑91 (MQ=255)

                                                                   ttttGTGACAAATGCTGTATGTAGTGTCACAATAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGCACAGCTTTGTATGat                         <  1:3367762/91‑1 (MQ=255)

                                                                    tttGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGata                        <  1:1616874/91‑1 (MQ=255)

                                                                    tttGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGata                        >  1:262769/1‑91 (MQ=255)

                                                                      tgtgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      <  2:176925/91‑1 (MQ=255)

                                                                      tgtgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      <  1:824470/91‑1 (MQ=255)

                                                                        tgACAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctta                    <  1:936474‑M2/91‑73 (MQ=255)

                                                                        tgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                    >  1:1001442/1‑91 (MQ=255)

                                                                            aaaTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTa                <  1:2576242/91‑1 (MQ=255)

                                                                            aaaTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTa                >  1:1199745/1‑91 (MQ=255)

                                                                              aTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTaaa              >  1:642901/1‑91 (MQ=255)

                                                                                gCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAAt            <  1:2455583/91‑1 (MQ=255)

                                                                                 ctgtctgtAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATa           <  1:3288615/91‑1 (MQ=255)

                                                                                 cTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATa           >  2:419106/1‑91 (MQ=255)

                                                                                 cTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATa           >  2:703554/1‑91 (MQ=255)

                                                                                  tgtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAc          >  2:85012/1‑91 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       >  2:1072899/1‑91 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       >  2:2651449/1‑91 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       <  2:2285883/91‑1 (MQ=255)

TTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAC  >  NC_012417/981‑1161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.