New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 278640178 (0.870)24 (0.130) 8/140 NT 13.2% intergenic (+235/+79) USA300HOU_RS01215/gsiB hypothetical protein/Glutathione‑binding protein GsiB
?USA300TCH1516_ALE = 278661 161 (0.900)intergenic (+256/+58) USA300HOU_RS01215/gsiB hypothetical protein/Glutathione‑binding protein GsiB

Only 100 of 272 total aligned reads displayed.

GTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTA  >  USA300TCH1516_ALE/278571‑278750
                                                                                          |                                                                                         
gattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTc                                                                                           >  2:1769549‑M1/61‑91 (MQ=255)
gattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTc                                                                                           >  2:2156490‑M1/61‑91 (MQ=255)
gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc                                                                                           >  2:3163529/1‑91 (MQ=255)
gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc                                                                                           <  2:492568/91‑1 (MQ=255)
 taataaTCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCg                                                                                          <  1:3890859‑M2/91‑2 (MQ=255)
 taataaTCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCg                                                                                          >  1:563034‑M2/1‑90 (MQ=255)
 attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg                                                                                          >  2:728669‑M1/60‑91 (MQ=255)
  ttgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCgg                                                                                         >  1:3774277‑M1/59‑91 (MQ=255)
  aataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCgg                                                                                         >  1:2326936‑M2/1‑89 (MQ=255)
   ataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggc                                                                                        >  2:986208‑M2/1‑88 (MQ=255)
     aatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgt                                                                                      <  2:3530862‑M2/91‑6 (MQ=255)
       tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATCAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg                                                                                    >  2:3551719‑M2/1‑84 (MQ=255)
       tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg                                                                                    >  2:3311397‑M2/1‑84 (MQ=255)
       tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg                                                                                    >  2:2856799‑M2/1‑84 (MQ=255)
       tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg                                                                                    >  1:868712‑M2/1‑84 (MQ=255)
         aTTTTATTGAAATTCATCAGACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggtt                                                                                  <  2:3457548‑M2/91‑10 (MQ=255)
         aTTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggtt                                                                                  <  1:2066889‑M2/91‑10 (MQ=255)
         aTTTTATTGAAATTCAGCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggtt                                                                                  >  2:3781141‑M2/1‑82 (MQ=255)
          ttttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggttt                                                                                 >  1:749468‑M2/1‑81 (MQ=255)
          ttttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggttt                                                                                 >  1:1211939‑M2/1‑81 (MQ=255)
            ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt                                                                               <  2:2122666/91‑1 (MQ=255)
              aTTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtat                                                                             >  1:1718017/1‑91 (MQ=255)
                tGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAg                                                                           <  2:911491/91‑1 (MQ=255)
                   aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTg                                                                        >  2:2037319/1‑91 (MQ=255)
                   aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTg                                                                        >  1:797256/1‑91 (MQ=255)
                    aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa                                                                       <  1:820069/91‑1 (MQ=255)
                     ttCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGaa                                                                      >  2:697079/1‑91 (MQ=255)
                       catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc                                                                    <  2:1725706/91‑1 (MQ=255)
                       catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc                                                                    <  1:924123/91‑1 (MQ=255)
                        atcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCa                                                                   >  1:1290854/1‑91 (MQ=255)
                          caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                 <  1:3106393/91‑1 (MQ=255)
                          caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                 <  1:2500682/91‑1 (MQ=255)
                           aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                <  1:680708/91‑1 (MQ=255)
                           aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                >  2:2556306/1‑91 (MQ=255)
                           aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                >  2:3150299/1‑91 (MQ=255)
                           aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                >  2:3390024/1‑91 (MQ=255)
                              cAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTg                                                             <  2:1137408/91‑1 (MQ=255)
                              cAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTg                                                             >  1:2795638/1‑91 (MQ=255)
                              cAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTg                                                             >  1:1608148/1‑91 (MQ=255)
                                  aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                         >  1:509440/1‑91 (MQ=255)
                                  aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                         <  1:640936/91‑1 (MQ=255)
                                   aTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACa                                                        <  2:2953968/91‑1 (MQ=255)
                                   aTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACa                                                        <  1:1013380/91‑1 (MQ=255)
                                    ttAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACAt                                                       >  2:1274938/1‑91 (MQ=255)
                                      aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa                                                     >  1:2244897/1‑91 (MQ=255)
                                      aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa                                                     >  1:3172346/1‑91 (MQ=255)
                                      aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTATTTATAGTTGAAGCAGGGCTGAGACATaa                                                     >  1:3172407/1‑91 (MQ=255)
                                       aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                    <  1:2467664/91‑1 (MQ=255)
                                         aCAACCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc                                                  <  1:1333650/91‑1 (MQ=255)
                                          cAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCa                                                 >  2:1290676/1‑91 (MQ=255)
                                             tCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATg                                              >  2:3128441/1‑91 (MQ=255)
                                              cATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGt                                             <  2:2718652/91‑1 (MQ=255)
                                                tataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTcc                                           <  1:1856186/91‑1 (MQ=255)
                                                 ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                          >  1:1082313/1‑91 (MQ=255)
                                                 ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                          >  1:3840274/1‑91 (MQ=255)
                                                   aaGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcac                                        >  2:3823023/1‑91 (MQ=255)
                                                    aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                       >  2:254163/1‑91 (MQ=255)
                                                     gCATATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                      <  1:3250614/91‑1 (MQ=255)
                                                     gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                      <  1:455591/91‑1 (MQ=255)
                                                       aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc                                    >  1:1462289/1‑91 (MQ=255)
                                                        aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                   <  1:300029/91‑1 (MQ=255)
                                                          ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                 >  1:1379412/1‑91 (MQ=255)
                                                             AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                              <  1:2702798‑M1/91‑1 (MQ=255)
                                                             AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                              <  1:2867‑M1/91‑1 (MQ=255)
                                                              ACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc                             >  2:1493318‑M1/1‑91 (MQ=255)
                                                              ACCACGCCATAATCATATTGGATGACTTCGGCGTGGCTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc                             <  2:3700032‑M1/91‑1 (MQ=255)
                                                               ccgcGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTGGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                            <  2:578143/88‑1 (MQ=255)
                                                               CCACGCCATAATCATATTGGATGACTTCGGCGTGGTTGTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                            <  1:3318310‑M1/91‑1 (MQ=255)
                                                                cACGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgat                           <  1:74886‑M2/91‑65 (MQ=255)
                                                                  cGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgatta                         <  2:2428801‑M2/91‑67 (MQ=255)
                                                                  cGCCATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgatta                         <  2:1117546‑M2/91‑67 (MQ=255)
                                                                   GCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCa                        >  1:1000711‑M1/1‑91 (MQ=255)
                                                                   GCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCa                        >  1:962535‑M1/1‑91 (MQ=255)
                                                                    ccATAATCATATTGGACGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattatt                       <  2:1248520‑M2/91‑69 (MQ=255)
                                                                     cATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattatta                      <  2:2323631‑M2/91‑70 (MQ=255)
                                                                     cATAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaacttctgtttgatgaatttcaataaaatgattatta                      <  2:2992409‑M2/91‑70 (MQ=255)
                                                                     CATAATCATATTGGATGACTTCGGCGTGGTTTCTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAt                      <  2:3879233‑M1/91‑1 (MQ=255)
                                                                      aTAATCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattattac                     <  1:1755168‑M2/91‑71 (MQ=255)
                                                                      aTAATCATATTGGATGACTTCGGCGCGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATc                     >  2:1812092/1‑91 (MQ=255)
                                                                       tAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCg                    >  2:1602926/1‑91 (MQ=255)
                                                                        aaTCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattattacat                   <  2:796180‑M2/91‑73 (MQ=255)
                                                                        aaTCATATTGGATGACTTCggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaatgattattacat                   <  2:796151‑M2/91‑73 (MQ=255)
                                                                         aTCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                  >  2:1706138/1‑91 (MQ=255)
                                                                           cATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgt                <  2:3365559/91‑1 (MQ=255)
                                                                              atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg             >  2:2112414/1‑91 (MQ=255)
                                                                              atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg             <  2:2353590/91‑1 (MQ=255)
                                                                               ttGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGa            <  2:1932029/91‑1 (MQ=255)
                                                                                 ggATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATa          <  1:3937592/91‑1 (MQ=255)
                                                                                 ggATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATa          <  1:2208858/91‑1 (MQ=255)
                                                                                  gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACGTAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa         <  1:3949008/91‑1 (MQ=255)
                                                                                  gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa         <  2:2661660/91‑1 (MQ=255)
                                                                                  gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa         <  2:3579572/91‑1 (MQ=255)
                                                                                  gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa         <  1:3526702/91‑1 (MQ=255)
                                                                                   aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt        <  1:1807683/91‑1 (MQ=255)
                                                                                   aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt        <  1:3647904/91‑1 (MQ=255)
                                                                                    tGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATc       >  2:1098022/1‑91 (MQ=255)
                                                                                     gACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCg      <  1:1551502/91‑1 (MQ=255)
                                                                                     gACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTACGATAATCg      >  1:3778381/1‑91 (MQ=255)
                                                                                      aCTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGa     <  2:3060378/91‑1 (MQ=255)
                                                                                       cTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGAt    >  1:3218601/1‑91 (MQ=255)
                                                                                          |                                                                                         
GTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTA  >  USA300TCH1516_ALE/278571‑278750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.