BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	365029 =	120 (0.590)	17 (0.100)	6/136	NT	12.4%	intergenic (+39/+66)	nupC_1/sglT	Nucleoside permease NupC/Sodium/glucose cotransporter
*	?	USA300TCH1516_ALE	365083 =	138 (0.800)	17 (0.100)	6/136	NT	12.4%	intergenic (+93/+12)	nupC_1/sglT	Nucleoside permease NupC/Sodium/glucose cotransporter

Only 100 of 222 total aligned reads displayed.

GAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTT  >  USA300TCH1516_ALE/364993‑365172

gAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGtttt                                                                                           <  2:2937524/91‑1 (MQ=255)

  aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt                                                                                         >  1:1680085/1‑91 (MQ=255)

   tCGAAGTACCTAAATTGAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc                                                                                        <  2:3782707/91‑1 (MQ=255)

    cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa                                                                                       <  1:298155/91‑1 (MQ=255)

    cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAATGACGGGGTTTTATCa                                                                                       >  2:3775024/1‑91 (MQ=255)

       aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa                                                                                    >  1:740728/1‑91 (MQ=255)

         tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa                                                                                  <  2:3210874/91‑1 (MQ=255)

         tACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa                                                                                  >  1:1228344/1‑91 (MQ=255)

          aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa                                                                                 <  1:291058/91‑1 (MQ=255)

            cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc                                                                               >  1:3025157/1‑91 (MQ=255)

            cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc                                                                               >  1:2266325/1‑91 (MQ=255)

            cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc                                                                               <  2:290233/91‑1 (MQ=255)

            cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc                                                                               <  1:1412978/91‑1 (MQ=255)

            cTAAATTAAATTCATCGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCCTAACTTAGTGACGGGGTTTTATCATAACAATc                                                                               >  1:3376114/1‑91 (MQ=255)

             gaaattaaatgCATGGCAAAGCTAAACCCCGTCACCAAGTTGTCGCAACAGCGCATCATAACTTAGTGACTGGGTTTTATCATAGCAATCt                                                                              <  2:484800/90‑1 (MQ=255)

              aaattaaattCATGGCAAAGCTAAACCCCGTCGCCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa                                                                             <  1:473414/91‑1 (MQ=255)

              aaattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa                                                                             <  1:3268953/91‑1 (MQ=255)

              aaattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa                                                                             >  2:613560/1‑91 (MQ=255)

              aaattaaatcCATGGCAAAGCTAAACCCCGGCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa                                                                             <  1:2789799/91‑1 (MQ=255)

               aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                                                                            >  1:719735/1‑91 (MQ=255)

                    aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt                                                                       <  1:2506768/91‑1 (MQ=255)

                    aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt                                                                       >  2:1177990/1‑91 (MQ=255)

                     attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc                                                                      >  1:2486144/1‑91 (MQ=255)

                      ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg                                                                     >  1:2517670/1‑91 (MQ=255)

                       tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                                    <  2:2161867/91‑1 (MQ=255)

                       tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                                    <  2:2041921/91‑1 (MQ=255)

                       tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                                    >  1:2001324/1‑91 (MQ=255)

                       tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt                                                                    <  2:1505040/91‑1 (MQ=255)

                         aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACACTCTACTTTTTCGTAg                                                                  >  2:3345684/1‑91 (MQ=255)

                          tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc                                                                 >  1:2565975/1‑91 (MQ=255)

                          tGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGc                                                                 <  2:680336/91‑1 (MQ=255)

                            tgatgataAAACCCCGTCGCCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg                                                               >  2:3626427‑M1/9‑91 (MQ=255)

                               aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                                            <  1:3453216/91‑1 (MQ=255)

                               aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                                            <  1:2807214/91‑1 (MQ=255)

                               aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt                                                            <  2:3539774/91‑1 (MQ=255)

                                aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt                                                           <  1:2701277/91‑1 (MQ=255)

                                 gCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttttt                                                          <  1:826915/91‑1 (MQ=255)

                                  cTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg                                                         >  1:2127462/1‑91 (MQ=255)

                                   tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa                                                        <  2:2792725/91‑1 (MQ=255)

                                    AAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaa                                                       >  2:3873497‑M1/1‑91 (MQ=255)

                                    AAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaa                                                       <  1:3377467‑M1/91‑1 (MQ=255)

                                     AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa                                                      <  2:255287‑M1/91‑1 (MQ=255)

                                     AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa                                                      <  2:2213054‑M1/91‑1 (MQ=255)

                                       CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                                    >  1:3875768‑M1/1‑91 (MQ=255)

                                           GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg                                                >  2:2946162‑M1/1‑91 (MQ=255)

                                           GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg                                                <  1:632409‑M1/91‑1 (MQ=255)

                                           GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg                                                >  2:1516579‑M1/1‑91 (MQ=255)

                                               CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                            >  2:1383256‑M1/1‑91 (MQ=255)

                                               CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                            <  1:2491422‑M1/91‑1 (MQ=255)

                                               CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa                                            <  2:1584471‑M1/91‑1 (MQ=255)

                                                 aagttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGCAATGTATGTTGATg                                          >  2:723357‑M2/42‑91 (MQ=255)

                                                  agttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                         >  1:110094‑M2/41‑91 (MQ=255)

                                                  agttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                         >  1:1698072‑M2/41‑91 (MQ=255)

                                                  agttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                         >  1:2047989‑M2/41‑91 (MQ=255)

                                                  aGTTGGCGCAACAGCGCATCATAGCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                         <  2:3422443/91‑1 (MQ=255)

                                                  aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                         >  1:1727124/1‑91 (MQ=255)

                                                  aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg                                         >  2:2474423/1‑91 (MQ=255)

                                                   gttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                        >  1:3738373‑M2/40‑91 (MQ=255)

                                                   gttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                        >  1:900024‑M2/40‑91 (MQ=255)

                                                   gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                        <  1:1121303/91‑1 (MQ=255)

                                                   gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                        <  1:1121775/91‑1 (MQ=255)

                                                   gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                        >  1:1571042/1‑91 (MQ=255)

                                                   gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                        <  2:116464/91‑1 (MQ=255)

                                                   gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt                                        >  1:1570948/1‑91 (MQ=255)

                                                    ttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                       >  1:405637‑M2/39‑91 (MQ=255)

                                                    ttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                       >  1:1521778‑M2/39‑91 (MQ=255)

                                                    ttGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                       <  2:3165501/91‑1 (MQ=255)

                                                    ttGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt                                       <  1:3325097/91‑1 (MQ=255)

                                                     tatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGttt                                      >  1:400940‑M2/38‑91 (MQ=255)

                                                      ggCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTa                                     >  1:2254817/1‑91 (MQ=255)

                                                       gcgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAt                                    >  1:1803240/1‑91 (MQ=255)

                                                       gcgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGACGTTTTTGAAATGTATGTTGATGGTTTAt                                    >  1:3168465/1‑91 (MQ=255)

                                                        cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATc                                   >  2:2618627/1‑91 (MQ=255)

                                                             cAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt                              <  2:2472833/91‑1 (MQ=255)

                                                             cAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt                              <  1:185262/91‑1 (MQ=255)

                                                              aGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTc                             <  2:1083022/91‑1 (MQ=255)

                                                               gcgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCa                            <  1:130567/91‑1 (MQ=255)

                                                               gcgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCa                            >  2:1330445/1‑91 (MQ=255)

                                                                cgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaa                           >  1:534371/1‑91 (MQ=255)

                                                                 gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa                          <  1:3199352/91‑1 (MQ=255)

                                                                 gcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaa                          <  1:2365160/91‑1 (MQ=255)

                                                                  catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTTTCCGTTTTTGAATTACATGTTGTATGTTTATCTTTTTCaaaa                         >  2:1274060/1‑91 (MQ=255)

                                                                  catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa                         >  2:1274672/1‑91 (MQ=255)

                                                                  catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa                         <  2:1706543/91‑1 (MQ=255)

                                                                  catcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaa                         <  2:2311984/91‑1 (MQ=255)

                                                                      atAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTg                     <  1:2069248/91‑1 (MQ=255)

                                                                      atAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTg                     <  2:3408983/91‑1 (MQ=255)

                                                                        aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt                   <  2:3090254/91‑1 (MQ=255)

                                                                         aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa                  <  1:4299/91‑1 (MQ=255)

                                                                         aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa                  <  1:3088/91‑1 (MQ=255)

                                                                              gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATccc             >  2:2710276‑M2/13‑91 (MQ=255)

                                                                              gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATccc             <  2:165665‑M2/79‑1 (MQ=255)

                                                                              gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGATTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATccc             <  2:3478687‑M2/79‑1 (MQ=255)

                                                                                aacggggtttTATAAAAACAATCTACTTTTTAGTAGCCGTATTTGAAATGTATGTTGATGGTTTATCTTTTTCAACAATTGTTAATCCCGt           <  1:1174996‑M2/81‑1 (MQ=255)

                                                                                 acggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGtt          >  1:88906‑M2/10‑91 (MQ=255)

                                                                                  cggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTta         >  2:2593015‑M2/9‑91 (MQ=255)

                                                                                  cggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTta         <  1:3591987‑M2/83‑1 (MQ=255)

                                                                                  cggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTta         <  1:2446238‑M2/83‑1 (MQ=255)

                                                                                     ggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTatat      >  1:363041‑M2/6‑91 (MQ=255)

                                                                                        ttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCtt   <  2:3958466‑M2/89‑1 (MQ=255)

GAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTT  >  USA300TCH1516_ALE/364993‑365172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.