BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	492708 =	109 (0.540)	17 (0.100)	9/128	NT	14.9%	intergenic (+130/+55)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein
*	?	USA300TCH1516_ALE	492758 =	108 (0.660)	17 (0.100)	9/128	NT	14.9%	intergenic (+180/+5)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein

Only 100 of 224 total aligned reads displayed.

TCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTGA  >  USA300TCH1516_ALE/492668‑492848

 cAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCt                                                                                           >  2:3941262/1‑91 (MQ=255)

      tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt                                                                                      >  2:100189/1‑91 (MQ=255)

      tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt                                                                                      >  2:1751649/1‑91 (MQ=255)

      tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt                                                                                      <  1:3441569/91‑1 (MQ=255)

         tGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGt                                                                                   <  1:950705/91‑1 (MQ=255)

           aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt                                                                                 >  1:2784325/1‑91 (MQ=255)

            ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt                                                                                >  1:89666/1‑91 (MQ=255)

            ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt                                                                                <  1:2098247/91‑1 (MQ=255)

              aaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCa                                                                              >  1:2734550‑M1/27‑91 (MQ=255)

               ttgtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCAt                                                                             >  2:1823584/1‑91 (MQ=255)

               ttgtAATAGGAATTTTTGTATATGAAAAAGGATCGGTAGAATGAACCTCATGTTCTATGATCGACCAATCCTTTTCTGAATTAGTATTCAt                                                                             >  1:3157541/1‑91 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           <  2:2050615/91‑1 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           <  1:3396563/91‑1 (MQ=255)

                 gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGt                                                                           <  1:323159/91‑1 (MQ=255)

                  tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt                                                                          <  2:3351499/91‑1 (MQ=255)

                  tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt                                                                          >  1:194615/1‑91 (MQ=255)

                  tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt                                                                          >  1:194576/1‑91 (MQ=255)

                      aGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTAc                                                                      <  1:2327977/91‑1 (MQ=255)

                       ggAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACt                                                                     >  1:257712/1‑91 (MQ=255)

                        gAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtt                                                                    >  1:1212710/1‑91 (MQ=255)

                        gAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtt                                                                    <  1:181611/91‑1 (MQ=255)

                         aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt                                                                   >  1:1571866/1‑91 (MQ=255)

                         aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt                                                                   <  2:2503962/91‑1 (MQ=255)

                          aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                                                                  >  1:3423733/1‑91 (MQ=255)

                          aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                                                                  >  1:668618/1‑91 (MQ=255)

                          aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg                                                                  <  1:3299723/91‑1 (MQ=255)

                           tttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGc                                                                 >  2:3232468/1‑91 (MQ=255)

                           tttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGc                                                                 >  1:2006343/1‑91 (MQ=255)

                             tttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGa                                                               >  2:2518246/1‑91 (MQ=255)

                              ttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa                                                              <  2:2935049/91‑1 (MQ=255)

                              ttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa                                                              >  1:2090960/1‑91 (MQ=255)

                                gTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATg                                                            <  2:1272885/91‑1 (MQ=255)

                                  atatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt                                                          <  1:1262368/91‑1 (MQ=255)

                                  atatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt                                                          >  1:2477825/1‑91 (MQ=255)

                                  atatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt                                                          <  1:8198/91‑1 (MQ=255)

                                     tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt                                                       <  1:1486050/91‑1 (MQ=255)

                                        aaaaGGATTGGTCGAAGGAACTTCATGTTCTATGTTCGACCCATCCTTTTCTGTATTAGTAATCATGGTTTACATTGCGAATGCTTGTaaa                                                    <  2:195936/91‑1 (MQ=255)

                                           AGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataa                                                 <  1:59476‑M1/91‑1 (MQ=255)

                                           AGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataa                                                 <  2:3583502‑M1/91‑1 (MQ=255)

                                             GATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATc                                               <  2:3806323‑M1/91‑1 (MQ=255)

                                             GATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATc                                               <  2:2290148‑M1/91‑1 (MQ=255)

                                               TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATACTCTa                                             <  1:3289179‑M1/91‑1 (MQ=255)

                                               TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa                                             <  2:2167461‑M1/91‑1 (MQ=255)

                                                TGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg                                            >  2:319708‑M1/1‑91 (MQ=255)

                                                 GGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGc                                           <  2:3391497‑M1/91‑1 (MQ=255)

                                                  GTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCa                                          <  1:469651‑M1/91‑1 (MQ=255)

                                                     GAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCg                                       >  1:417534‑M1/1‑91 (MQ=255)

                                                      aacatagaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGt                                      >  2:2926769‑M2/37‑91 (MQ=255)

                                                       acatagaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     >  1:2446947‑M2/36‑91 (MQ=255)

                                                       acatagaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     >  1:1744426‑M2/36‑91 (MQ=255)

                                                       ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     <  2:3215736‑M1/91‑1 (MQ=255)

                                                       ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     <  1:1097057‑M1/91‑1 (MQ=255)

                                                       ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     >  1:2189639‑M1/1‑91 (MQ=255)

                                                       ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt                                     >  1:1640619‑M1/1‑91 (MQ=255)

                                                        tGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                                    <  2:1301793/91‑1 (MQ=255)

                                                        tGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                                    <  1:3069735/91‑1 (MQ=255)

                                                        catagaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGttt                                    >  1:3767233‑M2/35‑91 (MQ=255)

                                                        agAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGGTTGTAAATAATCTAGCTCCGttt                                    <  2:1909198/90‑1 (MQ=255)

                                                         gAACTTCATGTTCTATGTTCGACCAGTCCTTTTCTGAATTAGTATTCATGTTGTACTTTGCGAAGGCTTGTAAATAATCTAGCACCGTTTg                                   <  2:2219961/91‑1 (MQ=255)

                                                           agaacatgaagttcattcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtt                                 >  2:2430973‑M2/32‑91 (MQ=255)

                                                           aCTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtt                                 >  1:2339866/1‑91 (MQ=255)

                                                           aCTTCATGTTCTATGTTCGACCAATCCTTTTCCGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGtt                                 >  2:3889892/1‑91 (MQ=255)

                                                              tCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGttatt                              >  1:718093/1‑91 (MQ=255)

                                                                aTGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTaa                            <  1:1899525/91‑1 (MQ=255)

                                                                aTGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTaa                            >  2:2379716/1‑91 (MQ=255)

                                                                aTGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTaa                            >  1:362429/1‑91 (MQ=255)

                                                                  gTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTACAg                          >  2:3443699/1‑91 (MQ=255)

                                                                  gTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAg                          <  2:3766947/91‑1 (MQ=255)

                                                                   ttCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGt                         <  1:522276/91‑1 (MQ=255)

                                                                    tCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGCTATTAAACTa                        >  2:1638738/1‑91 (MQ=255)

                                                                           tcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTg                 >  2:3951397‑M2/16‑91 (MQ=255)

                                                                            cgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGc                >  1:3558998‑M2/15‑91 (MQ=255)

                                                                            cgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGc                >  1:755022‑M2/15‑91 (MQ=255)

                                                                            cgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGc                >  1:2875083‑M2/15‑91 (MQ=255)

                                                                             gaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGcc               <  2:2915000‑M2/78‑1 (MQ=255)

                                                                              accaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCa              <  2:1942367‑M2/79‑1 (MQ=255)

                                                                               ccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAc             >  2:3085851‑M2/12‑91 (MQ=255)

                                                                               ccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAc             <  2:3463893‑M2/80‑1 (MQ=255)

                                                                                 aatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTg           >  1:289359‑M2/10‑91 (MQ=255)

                                                                                 aatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTg           <  2:781944‑M2/82‑1 (MQ=255)

                                                                                  atccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGc          <  1:2745333‑M2/83‑1 (MQ=255)

                                                                                  atccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGc          <  1:2219527‑M2/83‑1 (MQ=255)

                                                                                  atccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGc          <  1:1004318‑M2/83‑1 (MQ=255)

                                                                                   tccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCt         >  2:1500187‑M2/8‑91 (MQ=255)

                                                                                   tccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCt         <  2:717622‑M2/84‑1 (MQ=255)

                                                                                   tccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCt         <  2:1078087‑M2/84‑1 (MQ=255)

                                                                                   tccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCt         <  2:1020898‑M2/84‑1 (MQ=255)

                                                                                    ccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCtt        >  1:3801691‑M2/7‑91 (MQ=255)

                                                                                     cttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCttt       <  2:887486‑M2/86‑1 (MQ=255)

                                                                                     cttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCttt       <  2:1189639‑M2/86‑1 (MQ=255)

                                                                                      ttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCtttt      >  2:267297‑M2/5‑91 (MQ=255)

                                                                                      ttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCGAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCtttt      <  2:3661619‑M2/87‑1 (MQ=255)

                                                                                       tttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCttttt     >  1:3212418‑M2/4‑91 (MQ=255)

                                                                                       tttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCttttt     <  2:523098‑M2/88‑1 (MQ=255)

                                                                                       tttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCttttt     <  2:816760‑M2/88‑1 (MQ=255)

                                                                                         tCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTg   >  2:2449390‑M2/2‑91 (MQ=255)

                                                                                         tCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTg   <  2:2114481‑M2/90‑1 (MQ=255)

                                                                                         tCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTg   <  2:1369322‑M2/90‑1 (MQ=255)

                                                                                         tCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGCTATTAAAGTAACAACTGCCACTGCTTTTTTg   <  1:3507770‑M2/90‑1 (MQ=255)

                                                                                          cTGAATTAGTATTCATGTTTTACTTTGTGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTGa  >  1:3004811/1‑91 (MQ=255)

TCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTTGA  >  USA300TCH1516_ALE/492668‑492848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.