BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 754401	164 (0.810)	22 (0.120)	12/146	NT	12.6%	coding (379/459 nt)	USA300HOU_RS03685	hypothetical protein
*	?	USA300TCH1516_ALE	= 754417	155 (0.830)	22 (0.120)	12/146	NT	12.6%	coding (363/459 nt)	USA300HOU_RS03685	hypothetical protein

Only 100 of 248 total aligned reads displayed.

AGCTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTATGATGC  >  USA300TCH1516_ALE/754328‑754507

aGCTCCTTAGTTCGATGACTGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAc                                                                                           >  2:2528729‑M2/1‑90 (MQ=255)

aGCTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAc                                                                                           >  1:3506552‑M2/1‑90 (MQ=255)

 gCTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAcc                                                                                          <  1:3215353‑M2/91‑3 (MQ=255)

 gCTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAcc                                                                                          >  1:1432965‑M2/1‑89 (MQ=255)

 gCTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAcc                                                                                          <  2:3315336‑M2/91‑3 (MQ=255)

 gCTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAcc                                                                                          >  1:1739624‑M2/1‑89 (MQ=255)

  cTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAcca                                                                                         >  1:3767361‑M2/1‑88 (MQ=255)

   tCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTTTTTTTTTTTTTTAAAAGGTGGGGGACCTTTGTGTCGAccac                                                                                        <  2:1041149‑M2/91‑5 (MQ=255)

   tCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAccac                                                                                        >  2:3479760‑M2/1‑87 (MQ=255)

   tCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACATTTGTGGCGAccac                                                                                        <  2:3573916‑M2/91‑5 (MQ=255)

     cTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAccacct                                                                                      <  1:109301‑M2/91‑7 (MQ=255)

     cTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAccacct                                                                                      >  1:2618204‑M2/1‑85 (MQ=255)

      ttAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAccacctt                                                                                     <  2:109906‑M2/91‑8 (MQ=255)

       tAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTg                                                                                    >  1:1557147/1‑91 (MQ=255)

       tAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTg                                                                                    <  2:284133/91‑1 (MQ=255)

         aTTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGtt                                                                                  >  1:2832037/1‑91 (MQ=255)

          ttCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGttt                                                                                 >  1:2077645/1‑91 (MQ=255)

          ttCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGttt                                                                                 <  2:324820/91‑1 (MQ=255)

           tCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGtttt                                                                                <  1:2966302/91‑1 (MQ=255)

           tCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGtttt                                                                                >  2:3131021/1‑91 (MQ=255)

           tCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGtttt                                                                                <  2:2895963/91‑1 (MQ=255)

           tCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGtttt                                                                                <  1:3665495/91‑1 (MQ=255)

             gATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCt                                                                              <  2:2600847/91‑1 (MQ=255)

              atgaatgaCTTTTAATAGTGATTGTTCAAACACTTTTTGTTCTTTTTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCATCTTGTTTTCTa                                                                             >  2:293630/1‑91 (MQ=255)

                 aatgaCTTTTAATCGTGATTGTTCAAACACTTTTTGATCTTGCGTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAAtt                                                                          <  1:3953386/91‑1 (MQ=255)

                  atgaCTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAAttt                                                                         >  1:306147/1‑91 (MQ=255)

                  atgaCTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAAttt                                                                         >  2:1765232/1‑91 (MQ=255)

                   tgaCTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTtg                                                                        >  2:3527588/1‑91 (MQ=255)

                   tgaCTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTtg                                                                        <  2:2373897/91‑1 (MQ=255)

                   tgaCTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTtg                                                                        <  1:590425/91‑1 (MQ=255)

                     aCTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTtgtg                                                                      <  1:1346439/91‑1 (MQ=255)

                      cTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGc                                                                     >  2:782363/1‑91 (MQ=255)

                       ttttAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCa                                                                    <  1:3209293/91‑1 (MQ=255)

                       ttttAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCa                                                                    <  1:2103616/91‑1 (MQ=255)

                        tttAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCAt                                                                   <  1:2991738/91‑1 (MQ=255)

                          tAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTc                                                                 <  1:346276/91‑1 (MQ=255)

                            aTAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCat                                                               >  1:1543345/1‑91 (MQ=255)

                            aTAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATGTGTGCATTCat                                                               <  1:652139/91‑1 (MQ=255)

                             tAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCata                                                              >  1:3756028/1‑91 (MQ=255)

                              aGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCatat                                                             >  2:2525616/1‑91 (MQ=255)

                               gTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCatata                                                            <  2:3331941/91‑1 (MQ=255)

                                tGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCatatat                                                           <  1:844564/91‑1 (MQ=255)

                                 gATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGATTTCTAATTTGTGCATTCATATATc                                                          >  1:3687782/1‑91 (MQ=255)

                                  aTTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCg                                                         <  2:1499840/91‑1 (MQ=255)

                                       tCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTAt                                                    >  2:2275195/1‑91 (MQ=255)

                                        cAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATc                                                   <  2:1667860/91‑1 (MQ=255)

                                         aaaCACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCt                                                  <  2:1948504/91‑1 (MQ=255)

                                          aaCACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTa                                                 <  1:468839/91‑1 (MQ=255)

                                           acacTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTaa                                                >  1:331775/1‑91 (MQ=255)

                                           acacTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTaa                                                >  2:625710/1‑91 (MQ=255)

                                             acTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATa                                              >  2:3721786/1‑91 (MQ=255)

                                               tttttGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAgt                                            >  1:1863473/1‑91 (MQ=255)

                                                  ttGATTTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAgttgt                                         >  2:1600902/1‑91 (MQ=255)

                                                  ttGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAgttgt                                         >  1:777920/1‑91 (MQ=255)

                                                  ttGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAgttgt                                         >  2:3370934/1‑91 (MQ=255)

                                                  ttGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAgttgt                                         >  1:2334518/1‑91 (MQ=255)

                                                    gATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGttgttg                                       <  1:1214219/91‑1 (MQ=255)

                                                    gATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGttgttg                                       >  1:964111/1‑91 (MQ=255)

                                                    gATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGttgttg                                       <  1:1011305/91‑1 (MQ=255)

                                                    gATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGttgttg                                       <  2:2742173/91‑1 (MQ=255)

                                                    gATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGttgttg                                       <  2:3861952/91‑1 (MQ=255)

                                                    gATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGttgttg                                       >  2:2106877/1‑91 (MQ=255)

                                                     aTCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGa                                      <  2:2603257/91‑1 (MQ=255)

                                                       cTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAat                                    >  2:2672866/1‑91 (MQ=255)

                                                          gCTTTGTAAAAGGTGGGGGACCTTTGTGGCGAccaccttttacaaagcaagatcaaaaagtgtttgaacaatcactattaaaagtcattca                                 <  1:2454815‑M2/91‑60 (MQ=255)

                                                            tttGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATAtttt                               <  2:2752766/91‑1 (MQ=255)

                                                            tttGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATAtttt                               >  1:1975030/1‑91 (MQ=255)

                                                             ttGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATAttttt                              >  1:2402496/1‑91 (MQ=255)

                                                               gTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTgg                            <  1:1315889/91‑1 (MQ=255)

                                                                   aaGGTGGGGGACCTTTGTGGCGAccaccttttacaaagcaagatcaaaaagtgtttgaacaatcactattaaaagtcattcatcgaattaa                        <  1:2055787‑M2/91‑69 (MQ=255)

                                                                   aaGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAAtt                        <  1:2116932/91‑1 (MQ=255)

                                                                    aGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTg                       <  1:2649369/91‑1 (MQ=255)

                                                                     ggTGGGGGACCTTTGTGGCGAccaccttttacaaagcaagatcaaaaagtgtttgaacaagcactattaaaagtcattcatcgacttaagg                      <  2:558542‑M2/91‑71 (MQ=255)

                                                                     ggTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGt                      <  2:337994/91‑1 (MQ=255)

                                                                     ggTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGt                      <  1:3818821/91‑1 (MQ=255)

                                                                        gggggACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGtata                   <  1:213034/91‑1 (MQ=255)

                                                                         ggggACCTTTGTGGCGAccaccttttacaaagcaagatcaaaaagtgtttgaacaatcactattaaaagtcattcatcgaattaaggagct                  <  2:262397‑M2/91‑75 (MQ=255)

                                                                         ggggACCTTTGTGGCGAccaccttttacaaagcaagatcaaaaagtgtttgaacaatcactattaaaagtcattcatcgaattaaggagct                  <  1:3604248‑M2/91‑75 (MQ=255)

                                                                         ggggACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTatat                  >  1:3587726/1‑91 (MQ=255)

                                                                         ggggACCCTTGTGGCGAccaccttttacaaagcaagatcaaaaagtgtttgaacaatcactattaaaagtcattcatcgaattcaggagct                  <  2:81682‑M2/91‑75 (MQ=255)

                                                                          gggACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATc                 >  2:1930848/1‑91 (MQ=255)

                                                                          gggACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATc                 >  1:1477300/1‑91 (MQ=255)

                                                                           ggACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCt                >  1:3739041/1‑91 (MQ=255)

                                                                           ggACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCt                >  1:1297933/1‑91 (MQ=255)

                                                                           ggACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCt                >  2:2057060/1‑91 (MQ=255)

                                                                            gACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCtt               >  2:3270434/1‑91 (MQ=255)

                                                                            gACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCtt               >  1:2106106/1‑91 (MQ=255)

                                                                              ccTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTcc             >  2:489090/1‑91 (MQ=255)

                                                                              ccTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTcc             >  2:763091/1‑91 (MQ=255)

                                                                               cTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTccc            <  1:32465/91‑1 (MQ=255)

                                                                               cTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTccc            <  1:2586582/91‑1 (MQ=255)

                                                                                  tgtgGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCAtt         <  1:159/91‑1 (MQ=255)

                                                                                    tgGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTaa       >  2:3928482/1‑90 (MQ=255)

                                                                                      gCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTatgg     >  2:3927658/1‑90 (MQ=255)

                                                                                      gCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTatga     >  2:3924075/1‑91 (MQ=255)

                                                                                      gCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTatga     <  1:1143990/91‑1 (MQ=255)

                                                                                       cGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTatgat    <  2:1268979/91‑1 (MQ=255)

                                                                                         accaccTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTATGATGc  >  1:2204565/1‑91 (MQ=255)

                                                                                         accaccTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTATGATGc  <  2:2937356/91‑1 (MQ=255)

                                                                                         accaccTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTATGATGc  <  2:1328942/91‑1 (MQ=255)

AGCTCCTTAATTCGATGAATGACTTTTAATAGTGATTGTTCAAACACTTTTTGATCTTGCTTTGTAAAAGGTGGGGGACCTTTGTGGCGACCACCTTGTTTTCTAATTTGTGCATTCATATATCGTTTATCTAATAGTTGTTGAATATTTTTGGAATTGTATATCTTCCCATTATGATGC  >  USA300TCH1516_ALE/754328‑754507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.