BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1030896	178 (0.870)	10 (0.060)	8/134	NT	5.7%	intergenic (+19/‑117)	ktrB_1/yfkN_2	Ktr system potassium uptake protein B/Trifunctional nucleotide phosphoesterase protein YfkN
*	?	USA300TCH1516_ALE	= 1030919	181 (1.060)	10 (0.060)	8/134	NT	5.7%	intergenic (+42/‑94)	ktrB_1/yfkN_2	Ktr system potassium uptake protein B/Trifunctional nucleotide phosphoesterase protein YfkN

Only 100 of 255 total aligned reads displayed.

AGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGT  >  USA300TCH1516_ALE/1030829‑1031009

 gAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGa                                                                                           <  1:3801516‑M2/91‑2 (MQ=255)

  aaCCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaa                                                                                          <  2:2307679‑M2/91‑3 (MQ=255)

  aaCCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaa                                                                                          >  1:435005‑M2/1‑89 (MQ=255)

   aCCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATCTAGATTTTAACTGGaac                                                                                         <  1:3388655‑M2/91‑4 (MQ=255)

     cAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaactt                                                                                       <  1:3633820‑M2/91‑6 (MQ=255)

     cAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaactt                                                                                       <  1:9160‑M2/91‑6 (MQ=255)

      aGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaactta                                                                                      >  1:2407311‑M2/1‑85 (MQ=255)

        aTAACTTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGCTTAGTTAATGTAGATTTTAACTGGaacttaga                                                                                    <  2:788241‑M2/91‑9 (MQ=255)

        aTAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaacttaga                                                                                    <  1:1632561‑M2/91‑9 (MQ=255)

            aTTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaacttagattgc                                                                                >  1:3571218‑M2/1‑79 (MQ=255)

            aTTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaacttagattgc                                                                                >  1:2364799‑M2/1‑79 (MQ=255)

            aTTCCATGATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGTaacttagattgc                                                                                >  1:1687967‑M2/1‑79 (MQ=255)

             ttCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaacttagattgct                                                                               <  1:2667036‑M2/91‑14 (MQ=255)

             ttCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaacttagattgct                                                                               <  1:820305‑M2/91‑14 (MQ=255)

              tCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCtt                                                                              >  1:350353/1‑91 (MQ=255)

              tCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCtt                                                                              >  2:867826/1‑91 (MQ=255)

                cATTATCCAAAAGGACGTATTCAAAGAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCtttt                                                                            >  2:2337688/1‑91 (MQ=255)

                  ttATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCtttttt                                                                          <  2:3065808/91‑1 (MQ=255)

                   tATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTa                                                                         >  2:3579669/1‑91 (MQ=255)

                      ccAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGtt                                                                      <  2:2256425/91‑1 (MQ=255)

                      ccAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGtt                                                                      >  1:1746355/1‑91 (MQ=255)

                        aaaaGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTg                                                                    <  2:2575799/91‑1 (MQ=255)

                         aaaGAACGTATTCAAATTGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGt                                                                   <  2:207493/91‑1 (MQ=255)

                           aGAACGAATTCAAAAAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGAATTTAACTGGAACTTAGAATGCTTTTTTAGTTTGTAt                                                                 >  2:298344/1‑91 (MQ=255)

                              aCGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTAtttt                                                              <  1:526836/91‑1 (MQ=255)

                              aCGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTAtttt                                                              >  2:3688764/1‑91 (MQ=255)

                               cGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTTTTTTGTtttttt                                                             >  2:706434/1‑91 (MQ=255)

                               cGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTAttttt                                                             <  2:2216706/91‑1 (MQ=255)

                               cGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTAttttt                                                             >  2:3484851/1‑91 (MQ=255)

                                gTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTa                                                            >  2:2597582/1‑91 (MQ=255)

                                  aTTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAAc                                                          <  1:2792141/91‑1 (MQ=255)

                                    tCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACtt                                                        <  2:1405341/91‑1 (MQ=255)

                                       aaTAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTAtt                                                     <  2:1874641/91‑1 (MQ=255)

                                         tAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTAtttt                                                   <  2:1553828/91‑1 (MQ=255)

                                          aGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTta                                                  >  1:2543367/1‑91 (MQ=255)

                                           ggATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTtat                                                 <  2:1825907/91‑1 (MQ=255)

                                            gATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTtata                                                >  2:1264631/1‑91 (MQ=255)

                                              taatataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAg                                              <  2:2406644/91‑1 (MQ=255)

                                               aatataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGa                                             <  2:3078023/91‑1 (MQ=255)

                                               aatataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGa                                             >  2:3173344/1‑91 (MQ=255)

                                               aatataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGa                                             >  1:1435010/1‑91 (MQ=255)

                                               aatataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGa                                             <  2:375355/91‑1 (MQ=255)

                                               aatataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTGTTTTAGTTTGTATTTTTAACTTATTTTATAAGa                                             <  2:372101/91‑1 (MQ=255)

                                                atataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGAc                                            <  2:167455/91‑1 (MQ=255)

                                                atataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGAc                                            >  1:263073/1‑91 (MQ=255)

                                                atataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGAc                                            <  2:3147778/91‑1 (MQ=255)

                                                atataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGAc                                            <  1:3719880/91‑1 (MQ=255)

                                                acataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGAc                                            <  1:551031/89‑1 (MQ=255)

                                                  ataataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGa                                          >  1:1127593/1‑91 (MQ=255)

                                                   taataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGAt                                         >  1:2218423/1‑91 (MQ=255)

                                                   taataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGAt                                         <  1:2246897/91‑1 (MQ=255)

                                                    aataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGAtt                                        >  1:3193328/1‑91 (MQ=255)

                                                    aataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGAtt                                        <  2:882895/91‑1 (MQ=255)

                                                     ataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGCTTg                                       >  2:951724/1‑91 (MQ=255)

                                                     ataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTg                                       >  2:1598236/1‑91 (MQ=255)

                                                     ataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTg                                       >  1:2918697/1‑91 (MQ=255)

                                                     ataGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTg                                       >  2:1468197/1‑91 (MQ=255)

                                                      taGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTgg                                      <  2:3322979/91‑1 (MQ=255)

                                                       aGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGt                                     <  2:1913997/91‑1 (MQ=255)

                                                       aGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGt                                     <  2:1488322/91‑1 (MQ=255)

                                                        gCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGtt                                    >  1:1025/1‑91 (MQ=255)

                                                        gCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGtt                                    <  2:3532501/91‑1 (MQ=255)

                                                         cAATCTAAGTTTAGTTAATGTAGATTTTAACTGGaacttagattgctattatattatcctatttgaatacgttcttttggataatggaatt                                   <  1:3280882‑M2/91‑58 (MQ=255)

                                                         cAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGttt                                   >  1:1306156/1‑91 (MQ=255)

                                                         cAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGttt                                   <  2:3453859/91‑1 (MQ=255)

                                                             cTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGaa                               <  1:3878664/91‑1 (MQ=255)

                                                             cTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGaa                               >  1:399585/1‑91 (MQ=255)

                                                              tAAGTTTAGTTAATGTAGATTTTAACTGGaacttagattgctattatattatcctatttgaatacgttcttttggataatggaatttatct                              <  1:1804437‑M2/91‑63 (MQ=255)

                                                              tAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGaaa                              <  1:2056749/91‑1 (MQ=255)

                                                              tAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGaaa                              <  1:245606/91‑1 (MQ=255)

                                                               aaGTTTAGTTAATGTAGATTTTAACTGGaacttagattgctattatattatcctatttgaatacgttcttttggataatggaatttatctg                             <  2:598904‑M2/91‑64 (MQ=255)

                                                               aaGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGaaaa                             >  1:2126605/1‑91 (MQ=255)

                                                                aGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAAt                            >  1:1717846/1‑91 (MQ=255)

                                                                aGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAAt                            <  1:2991892/91‑1 (MQ=255)

                                                                  tttAGTTAATGTAGATTTTAACTGGaacttagattgctattatattatcctatttgaatacgtccttttggataatggaatttatctggtt                          <  2:1750033‑M2/91‑67 (MQ=255)

                                                                     aGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTaa                       <  2:1915692/91‑1 (MQ=255)

                                                                        tAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACt                    <  1:3403674/91‑1 (MQ=255)

                                                                           tGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGt                 >  1:1158694/1‑91 (MQ=255)

                                                                            gTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTa                <  2:740913/91‑1 (MQ=255)

                                                                             tAGTTTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTaa               <  1:3062833/91‑1 (MQ=255)

                                                                             tAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAAGTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTaa               <  2:3046435/91‑1 (MQ=255)

                                                                             tAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTaa               <  1:1061311/91‑1 (MQ=255)

                                                                             tAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTaa               <  1:2698190/91‑1 (MQ=255)

                                                                             tAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTaa               <  1:2877968/91‑1 (MQ=255)

                                                                              aGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAAc              >  2:642206/1‑91 (MQ=255)

                                                                                  tttAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATg          <  2:437936/91‑1 (MQ=255)

                                                                                   ttAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTATACTAGTAACAATgt         <  2:3358915/91‑2 (MQ=255)

                                                                                   ttAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATga         <  2:2845112/91‑1 (MQ=255)

                                                                                    tAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATgag        <  1:2155189/91‑1 (MQ=255)

                                                                                     aaCTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAGGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATgaga       <  2:3255019/91‑1 (MQ=255)

                                                                                     aaCTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATgaga       >  1:738726/1‑91 (MQ=255)

                                                                                      aCTGGAACTTAGATTGCTTTTTTCGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGagag      >  1:3130877/1‑91 (MQ=255)

                                                                                      aCTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGagag      >  2:1022970/1‑91 (MQ=255)

                                                                                      aCTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGagag      >  2:1056983/1‑91 (MQ=255)

                                                                                      aCTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGagag      <  2:696510/91‑1 (MQ=255)

                                                                                      aCTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGagag      >  1:967375/1‑91 (MQ=255)

                                                                                      aCTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGagag      >  1:3646893/1‑91 (MQ=255)

                                                                                        tGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACCTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGgt    <  2:2361553/91‑1 (MQ=255)

                                                                                         ggAACTTAGAGTGCTTTTTTAGTTTGTATGTGTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGgtg   <  2:2687125/91‑1 (MQ=255)

                                                                                          gAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGgtgt  <  2:2458502/91‑1 (MQ=255)

AGAACCAGATAAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAATATAATAGCAATCTAAGTTTAGTTAATGTAGATTTTAACTGGAACTTAGATTGCTTTTTTAGTTTGTATTTTTAACTTATTTTATAAGACGATTGGTTTCGAAAATGGTAAACTAGTAACAATGAGAGGTGT  >  USA300TCH1516_ALE/1030829‑1031009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.