BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1138356	199 (0.980)	13 (0.070)	9/140	NT	6.8%	intergenic (‑121/+82)	isdB/isdA	Iron‑regulated surface determinant protein B/Iron‑regulated surface determinant protein A
*	?	USA300TCH1516_ALE	= 1138378	181 (1.020)	13 (0.070)	9/140	NT	6.8%	intergenic (‑143/+60)	isdB/isdA	Iron‑regulated surface determinant protein B/Iron‑regulated surface determinant protein A

Only 100 of 254 total aligned reads displayed.

TGATTACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGTAAT  >  USA300TCH1516_ALE/1138288‑1138468

 gATTACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGa                                                                                           <  1:3850594‑M2/91‑2 (MQ=255)

  aTTACTTGTATTGTACATTGAAATGGTAGTTAATTGCAACGTTATTCTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGac                                                                                          >  1:424599‑M2/1‑89 (MQ=255)

   ttACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGaca                                                                                         <  1:2776123‑M2/91‑4 (MQ=255)

     aCTTCTATTGTACATTGCAATGTTAGTTCATTCCAACGTTATTTTATAAAAAAATAACCTCTGTTATAGATTATGCAATATCTATCacata                                                                                       <  2:1016746‑M2/91‑6 (MQ=255)

      cTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATCACATATGTTATAGATTATGAAATATCTATGacatat                                                                                      <  2:3919926‑M2/91‑7 (MQ=255)

        tgtattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGacataggt                                                                                    >  1:864664‑M2/1‑83 (MQ=255)

         gtattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATTTATGacataggtt                                                                                   <  2:56268‑M2/91‑10 (MQ=255)

         gtattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGacataggtt                                                                                   <  1:2515067‑M2/91‑10 (MQ=255)

          tattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGCTTATGAAATATCTATGacataggtta                                                                                  <  2:2349410‑M2/91‑11 (MQ=255)

            ttgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTtaaa                                                                                >  2:901758/1‑91 (MQ=255)

             tgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTtaaat                                                                               <  2:2222697/91‑1 (MQ=255)

             tgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTtaaat                                                                               >  1:1601764/1‑91 (MQ=255)

              gtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTtaaata                                                                              >  1:1379201/1‑91 (MQ=255)

                aCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTtaaataaa                                                                            >  1:1704932/1‑91 (MQ=255)

                aCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAAACTATGTTATAGATTATGAAATAACTATGACATAGGTtaaataaa                                                                            >  1:3143610/1‑91 (MQ=255)

                aCATTGAAATGTTAGCTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTtaaataaa                                                                            >  2:1188029/1‑91 (MQ=255)

                   ttGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAAtt                                                                         >  2:1525486/1‑91 (MQ=255)

                   ttGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAAtt                                                                         >  1:1350317/1‑91 (MQ=255)

                       aaTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaa                                                                     >  1:412130/1‑91 (MQ=255)

                       aaTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaa                                                                     >  2:2125057/1‑91 (MQ=255)

                        aTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaaa                                                                    >  2:1310746/1‑91 (MQ=255)

                        aTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaaa                                                                    >  1:3636331/1‑91 (MQ=255)

                        aTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTACGACATAGGTTAAATAAAATTtaaaa                                                                    >  1:3685833/1‑91 (MQ=255)

                         tGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaaat                                                                   <  1:2988054/91‑1 (MQ=255)

                          gttagttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaaata                                                                  <  2:2031071/91‑1 (MQ=255)

                           ttagttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaaataa                                                                 <  2:2847380/91‑1 (MQ=255)

                             agttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTtaaaataaaa                                                               >  1:3100218/1‑91 (MQ=255)

                              gttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATaaaaa                                                              >  1:1912364/1‑91 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             >  2:2776395/1‑91 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             <  2:1880041/91‑1 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             >  2:1516700/1‑91 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             >  2:3406430/1‑91 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             >  2:413457/1‑91 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             <  2:3747891/91‑1 (MQ=255)

                                taATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAat                                                            <  2:2960351/91‑1 (MQ=255)

                                taATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAat                                                            <  2:359020/91‑1 (MQ=255)

                                caaTTGCACCGTTATTTTATAAAACACTAACCTCTGTTCTAGATTATGAAATCTCTATGACATCGGCTCAATAAAATTTACCATaaacaac                                                            >  2:3953178/2‑90 (MQ=255)

                                 aaTTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAata                                                           <  2:1117889/91‑1 (MQ=255)

                                     gaaaCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAAAATAAAAAAAAAAATATAtt                                                       <  2:2830144/89‑1 (MQ=255)

                                     gCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATAtt                                                       <  1:1872605/91‑1 (MQ=255)

                                       aaCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTaa                                                     <  1:1031194/91‑1 (MQ=255)

                                       aaCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTaa                                                     >  1:327704/1‑91 (MQ=255)

                                       aaCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTaa                                                     <  2:2496520/91‑1 (MQ=255)

                                        aCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAg                                                    >  2:3274528/1‑91 (MQ=255)

                                        aCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAg                                                    >  2:2876119/1‑91 (MQ=255)

                                           ttATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTa                                                 <  2:832770/91‑1 (MQ=255)

                                           ttATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTa                                                 <  2:1882227/91‑1 (MQ=255)

                                             aTTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATg                                               >  1:332657/1‑91 (MQ=255)

                                             aTTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATg                                               >  1:1493038/1‑91 (MQ=255)

                                              ttttATAAAAAAATCACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGa                                              >  2:2863418/1‑91 (MQ=255)

                                              ttttATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGa                                              >  1:2047284/1‑91 (MQ=255)

                                              ttttATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGa                                              <  2:1379201/91‑1 (MQ=255)

                                                ttATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAgt                                            >  1:3430572/1‑91 (MQ=255)

                                                ttATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAgt                                            >  2:1685994/1‑91 (MQ=255)

                                                  ataAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAgtgt                                          >  2:2675971/1‑91 (MQ=255)

                                                    aaaaaaaTAACCTATGTTATAGATTATGAAATATCTATGacataggctatttttttataaaataacgttgcaattaactaacatttcaatg                                        <  1:2907701‑M2/91‑53 (MQ=255)

                                                    aaaaaaaTAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGa                                        <  2:1424475/91‑1 (MQ=255)

                                                      aaaaaTAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACg                                      >  2:1811269/1‑91 (MQ=255)

                                                       aaaaTAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACga                                     >  1:3477951/1‑91 (MQ=255)

                                                        atttAACCTATGTCATAGATATTTCATAATCTATAACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGAGTGACgat                                    >  2:2838963/4‑91 (MQ=17)

                                                        aaaTAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACgat                                    <  2:3029900/91‑1 (MQ=255)

                                                         aaTAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACgatg                                   >  1:568603/1‑91 (MQ=255)

                                                         aaTAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACgatg                                   <  2:1557968/91‑1 (MQ=255)

                                                          aTAACCTATGTTATAGATTATGAAATATCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatgtacaat                                  <  1:3590677‑M2/91‑59 (MQ=255)

                                                          aTAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACgatga                                  >  2:533073/1‑91 (MQ=255)

                                                           tAACCTATGTTATAGATAATGAAATATCTATAACATAGGTTAATTAATTTTTTATTTAAAAACTATATTACGTTATGAGTGTTACgatgat                                 >  2:2456423/1‑91 (MQ=25)

                                                            aaCCTATGTTATAGATTATGAAATATCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatgtacaatac                                <  2:1729339‑M2/91‑61 (MQ=255)

                                                             aCCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGattt                               >  1:3516660/1‑91 (MQ=255)

                                                             aCCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGattt                               >  2:1251695/1‑91 (MQ=255)

                                                             aCCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGattt                               >  2:3793726/1‑91 (MQ=255)

                                                             aCCTATGCTATAGATTATGAAATATCTATGACATAGGTAAAATAAAATTTAAAATAAAAAACATCTTAAGTTACGAGTGTGACGATGattt                               >  2:175397/1‑91 (MQ=255)

                                                              ccTATGTTATAGATTATGAAATATCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatgtacaatacaa                              <  1:785389‑M2/91‑63 (MQ=255)

                                                              ccTATGTTATAGATTATGAAATATCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatgtacaatacaa                              <  2:1887797‑M2/91‑63 (MQ=255)

                                                              ccTATGTTATAGATTATGAAATATCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatgtacaatacaa                              <  1:177632‑M2/91‑63 (MQ=255)

                                                                tATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGatttatt                            >  1:813838/1‑91 (MQ=255)

                                                                  tGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGAtttattta                          <  2:3188964/91‑1 (MQ=255)

                                                                   gTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAg                         >  2:2313484/1‑91 (MQ=255)

                                                                      ataGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAtt                      <  1:930275/91‑1 (MQ=255)

                                                                      ataGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAtt                      <  2:161730/91‑1 (MQ=255)

                                                                           ttATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttctttt                 <  1:2651112/91‑1 (MQ=255)

                                                                             aTGAAATATCTATGacataggttatttttttttaatataacgttgaaattaactaacatttcaatgtacaatacaagtaatcacttgataa               <  2:1352239‑M2/91‑78 (MQ=255)

                                                                             aTGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttct               >  1:662767/1‑91 (MQ=255)

                                                                             aTGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttct               >  2:3141223/1‑91 (MQ=255)

                                                                             aTGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttct               >  2:3370164/1‑91 (MQ=255)

                                                                             aTGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttct               <  1:1424156/91‑1 (MQ=255)

                                                                                aaaTATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTcttttctttt            <  1:2204310/91‑1 (MQ=255)

                                                                                aaaTATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTcttttctttt            >  1:1172027/1‑91 (MQ=255)

                                                                                aaaTATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTcttttctttt            <  1:1743361/91‑1 (MQ=255)

                                                                                aaaTATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTcttttctttt            >  2:2048250/1‑91 (MQ=255)

                                                                                  atatCTATGACATAGGTTAAATAAAATGTAAAATGAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCGTTTCTTTGGa          <  2:2581581/91‑1 (MQ=255)

                                                                                   tatCTATGACATAGGTTAAATAAAATTTAAAATAAAGAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGaa         <  2:3906790/91‑1 (MQ=255)

                                                                                   tatCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGaa         >  1:991110/1‑91 (MQ=255)

                                                                                    atCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGaaa        <  1:2548728/91‑1 (MQ=255)

                                                                                      cTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAg      <  1:902038/91‑1 (MQ=255)

                                                                                       tATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGt     <  1:2230366/91‑1 (MQ=255)

                                                                                       tATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGt     >  2:1917033/1‑91 (MQ=255)

                                                                                       tATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATCAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGt     >  2:3255171/1‑91 (MQ=255)

                                                                                        aTGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGta    >  2:696611/1‑91 (MQ=255)

                                                                                         tGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGATGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaa   >  2:2226962/1‑91 (MQ=255)

                                                                                         tGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaa   <  1:499871/91‑1 (MQ=255)

TGATTACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATATCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGTAAT  >  USA300TCH1516_ALE/1138288‑1138468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.