| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2492466 = | 91 (1.010) | 7 (0.080) | 6/250 | 12.8 | 7.9% | intergenic (+9/+37) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase |
| ? | USA300TCH1516_ALE | 2492499 = | 80 (0.970) | intergenic (+42/+4) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGAGAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2492615‑2492466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAATATATT > USA300TCH1516_ALE/2492499‑2492636 TTGAGAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGA > 4:304790/1‑141TTGAGAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGA > 3:294888/1‑141 GAGAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATG < 2:371247/141‑1 AGAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGACCCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCGCGCATAACGGGATGT < 3:159704/141‑1 AGAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGT > 2:399877/1‑141 GAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGTC < 1:468270/141‑1 GAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGTC < 1:63274/141‑1 AGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGTCT > 4:152544/1‑141 AGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATAACTACCGAACTAGATTCAGGCGGTATGTATATAAAATACTAAATTAAAAAAGACATCTCGCATAACGGAAAGTCT > 1:9918/1‑141 GTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGTCTT < 1:220952/141‑1 GAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATAT > 1:435435/1‑141 ACATCTCGCATAACGGGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCT > 2:202745/1‑141 ACATCTCGCATAACGGGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGA < 4:231538/58‑1 ACATCTCGCATAACGGGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGA > 3:231538/1‑58 CTCGCATAACGGGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTT < 1:240888/84‑1 CTCGCATAACGGGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTT > 2:240888/1‑84 CGCATAACGGGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAG > 4:184560/1‑141 GATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTT < 2:435435/141‑1 GATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTT > 4:265444/1‑141 TGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAA < 3:148113/141‑1 TTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTANGTANTCTCAACANCCACACCTTTAATATA < 1:655754/141‑1 TTTTAATTTGGCGTTTGATATACATACCGCCAGAATCAGGTTCGGTAGGTATCAACCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTACGTACTCCCAACATCCACACCTTTAATATATT < 2:613032/141‑1 TTGAGAGTACATACGTTAGTCTGATTGCAGACTACCCAGCGGATAAATTATATACAAAATTTGGATTTATACCTACCGAACCAGATTCAGGCGGTATGTATATCAAATACTAAATTAAAAAAGACATCTCGCATAACGGGATGTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2492615‑2492466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAATATATT > USA300TCH1516_ALE/2492499‑2492636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |