New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2492466 =	91 (1.010)	7 (0.080)	6/250	12.8	7.9%	intergenic (+9/+37)	yhfP/rimI_4	Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase
	?	USA300TCH1516_ALE	2492499 =	80 (0.970)					intergenic (+42/+4)	yhfP/rimI_4	Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAATATATTGCA  >  USA300TCH1516_ALE/2492359‑2492639                                                                                                                                             |                                                                                                                                             caagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                                                                                                              >  3:139100/1‑141 (MQ=255) caagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                                                                                                              >  4:101472/1‑141 (MQ=255) caagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTNCGGNGNAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                                                                                                              >  2:655754/1‑141 (MQ=255)   agTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTaa                                                                                                                                            <  1:336449/141‑1 (MQ=255)   agTTATTACATTTAATGAACTTCCAGAACAACATAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAAATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGAAGTCTATTTTaa                                                                                                                                            >  4:1452/1‑141 (MQ=255)      tattaCATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt                                                                                                                                         <  1:148599/141‑1 (MQ=255)       attaCATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtttc                                                                                                                                        >  1:613032/1‑140 (MQ=255)        ttaCATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAATGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAg                                                                                                                                       <  3:73206/141‑1 (MQ=255)        ttaCATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTACGCGAGATGTCTTTTTTAATTTAg                                                                                                                                       >  1:695050/1‑141 (MQ=255)         taCATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGt                                                                                                                                      <  1:419801/141‑1 (MQ=255)           cATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAt                                                                                                                                    <  1:543885/141‑1 (MQ=255)                 atgaACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGata                                                                                                                              <  1:348761/141‑1 (MQ=255)                  tgaACTTCCATAACGACTTATCATAGTAATTAAACATGAAAATAAAGGTCGCAGTTTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGatat                                                                                                                             <  2:645040/141‑1 (MQ=255)                   gaACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAtata                                                                                                                            >  2:661063/1‑141 (MQ=255)                   gaACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAtata                                                                                                                            >  4:275084/1‑141 (MQ=255)                    aaCTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatac                                                                                                                           <  1:45491/141‑1 (MQ=255)                     aCTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATataca                                                                                                                          >  4:5604/1‑141 (MQ=255)                        tCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatacatac                                                                                                                       <  2:660288/141‑1 (MQ=255)                         ccAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATAcc                                                                                                                      <  1:598185/141‑1 (MQ=255)                           aGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGc                                                                                                                    <  1:78947/141‑1 (MQ=255)                                 acTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAt                                                                                                              <  1:340138/141‑1 (MQ=255)                                  cTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAACAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATCCATACCCCCTGCAtt                                                                                                             >  2:239624/1‑140 (MQ=255)                                  cTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATAACTCCTTAATc                                                                                                             >  1:127815/1‑141 (MQ=255)                                  cTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATAGTGATCGAGTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATc                                                                                                             >  1:162232/1‑141 (MQ=255)                                    tAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg                                                                                                           >  3:139945/1‑141 (MQ=255)                                      aCAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGt                                                                                                         <  1:505106/141‑1 (MQ=255)                                          aGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCgg                                                                                                     >  1:442162/1‑141 (MQ=255)                                           gTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggt                                                                                                    <  1:88696/141‑1 (MQ=255)                                                 aaaCATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGtat                                                                                              >  1:542033/1‑141 (MQ=255)                                                  aaCATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGtata                                                                                             >  3:152544/1‑141 (MQ=255)                                                     aTGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                                                                          <  1:352037/141‑1 (MQ=255)                                                     aTGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt                                                                                          <  2:446107/141‑1 (MQ=255)                                                      tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                                                                         >  3:36213/1‑141 (MQ=255)                                                       gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                                                                                        <  3:262681/141‑1 (MQ=255)                                                       gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                                                                                        <  3:80886/141‑1 (MQ=255)                                                       gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTCAATCTGGTTCGGTAGGTATAAATcc                                                                                        >  2:695135/1‑141 (MQ=255)                                                            tAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtt                                                                                   <  1:423584/141‑1 (MQ=255)                                                             aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTTATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                                                                                  <  1:207213/141‑1 (MQ=255)                                                             aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                                                                                  <  4:92190/141‑1 (MQ=255)                                                             aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                                                                                  <  2:128932/141‑1 (MQ=255)                                                             aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                                                                                  >  1:690228/1‑141 (MQ=255)                                                             aaaGGGCGCATTGTGATCGATTTCGGTGTAGAGAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                                                                                  <  2:639074/141‑1 (MQ=255)                                                              aaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtttt                                                                                 <  1:576440/141‑1 (MQ=255)                                                               aGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtttt                                                                                 >  1:442287/1‑140 (MQ=255)                                                               aGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtttt                                                                                 <  2:442287/140‑1 (MQ=255)                                                               aGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTg                                                                                >  2:214693/1‑141 (MQ=255)                                                               aGGGCGAATTATTATAGATTTCGGTGTAGATAAATAGTATTAATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTg                                                                                <  2:306943/141‑1 (MQ=255)                                                                gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt                                                                               >  2:573506/1‑141 (MQ=255)                                                                        tGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAtt                                                                       <  2:395636/141‑1 (MQ=255)                                                                         gTTATCTATTTCGTTTTAGATAAATAGTATTCATGAAAAAGACATCACGTTATTCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt                                                                      <  2:485047/141‑1 (MQ=255)                                                                         gTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt                                                                      >  1:579875/1‑141 (MQ=255)                                                                            aTCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATc                                                                   >  3:95263/1‑141 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                                                                         >  4:147607/1‑117 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                                                                         <  3:147607/117‑1 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCg                                                                 <  1:109018/141‑1 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCg                                                                 <  4:278600/141‑1 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCg                                                                 <  1:175113/141‑1 (MQ=255)                                                                                aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCt                                                               <  4:79391/141‑1 (MQ=255)                                                                                aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCt                                                               <  1:449087/141‑1 (MQ=255)                                                                                   tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTggg                                                            >  4:230234/1‑141 (MQ=255)                                                                                      gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCGGGTTCGGTAGGTATAAATCCAAATTGTGTATATAATTTATCCGCTGGGTAg                                                         <  1:252628/141‑1 (MQ=255)                                                                                           gATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGc                                                    >  1:678293/1‑141 (MQ=255)                                                                                              aaaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAAt                                                 <  4:102014/141‑1 (MQ=255)                                                                                                 tAGTATTCATGGAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTgattgcag                                              <  1:684337/141‑8 (MQ=255)                                                                                                  aGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGa                                             <  1:542689/141‑1 (MQ=255)                                                                                                   gTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTAATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGAc                                            <  1:638562/141‑1 (MQ=255)                                                                                                    tATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACt                                           >  1:292888/1‑141 (MQ=255)                                                                                                       tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAAc                                        >  1:649312/1‑141 (MQ=255)                                                                                                         aTGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGt                                      >  2:191841/1‑141 (MQ=255)                                                                                                               aaGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTAc                                >  1:220952/1‑141 (MQ=255)                                                                                                                aGACTTTCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTTATATACATACCGCCTGAATCTAGTTCGGTAGTTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTAct                               <  1:9918/141‑1 (MQ=255)                                                                                                                aGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTAct                               <  4:152544/141‑1 (MQ=255)                                                                                                                 gACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTActc                              >  1:468270/1‑141 (MQ=255)                                                                                                                 gACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTActc                              >  1:63274/1‑141 (MQ=255)                                                                                                                  aCATCCCGTTATGCGCGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGGTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTActct                             >  3:159704/1‑141 (MQ=255)                                                                                                                  aCATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTActct                             <  2:399877/141‑1 (MQ=255)                                                                                                                   cATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACtctc                            >  2:371247/1‑141 (MQ=255)                                                                                                                     tCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCaa                          <  3:294888/141‑1 (MQ=255)                                                                                                                     tCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCaa                          <  4:304790/141‑1 (MQ=255)                                                                                                                                gagaTGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCt               <  2:269619/141‑1 (MQ=255)                                                                                                                                  gaTGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCttt             <  2:435435/141‑1 (MQ=255)                                                                                                                                  gaTGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCttt             >  4:265444/1‑141 (MQ=255)                                                                                                                                    tGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTaa           <  3:148113/141‑1 (MQ=255)                                                                                                                                        ttttttAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTANGTANTCTCAACANCCACACCTTTAatata       <  1:655754/141‑1 (MQ=255)                                                                                                                                          ttttAATTTGGCGTTTGATATACATACCGCCAGAATCAGGTTCGGTAGGTATCAACCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTACGTACTCCCAACATCCACACCTTTAATATAtt     <  2:613032/141‑1 (MQ=255)                                                                                                                                             tAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAATATATTGCa  <  2:649312/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             CAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAATATATTGCA  >  USA300TCH1516_ALE/2492359‑2492639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.