| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2497906 = | 106 (1.180) | 3 (0.040) | 3/256 | 14.2 | 3.0% | intergenic (+11/+75) | USA300HOU_RS12865/treP_2 | hypothetical protein/PTS system trehalose‑specific EIIBC component |
| ? | USA300TCH1516_ALE | 2497975 = | 97 (1.170) | intergenic (+80/+6) | USA300HOU_RS12865/treP_2 | hypothetical protein/PTS system trehalose‑specific EIIBC component | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCATTCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2498053‑2497906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATTGAAA > USA300TCH1516_ALE/2497975‑2498108 ATCATTCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGT > 2:184820/1‑141 TCAATCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTC < 2:674377/141‑1 TTCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATA > 1:14148/1‑141 TTCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATA > 1:483389/1‑141 TCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATAC < 1:99614/141‑1 TCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAACTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATAC > 4:286845/1‑141 aaCATTGCTATAACAGTTACTTTAATTTTAAATAAAAGAAAAGCAAATAAAGAAATTGAAAAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCT < 4:38949/139‑1 ATCATTGCTATAACATTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCT < 2:370337/141‑1 ATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCT < 1:516209/141‑1 ATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCT < 3:85243/141‑1 AGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTGGATAAAATTAAAG > 3:53352/1‑141 GAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCTCTTTTTTTATTCCACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGA > 1:149196/1‑141 AAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCAT > 1:190809/1‑141 CTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATT < 2:554272/141‑1 TGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATTG < 2:336486/141‑1 TGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATTG > 1:128916/1‑141 GTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATTGA > 1:246100/1‑141 TCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATTGAA < 2:462592/141‑1 tATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATTGAAA < 2:22691/140‑1 ATCATTCATCATTGCTATAACAGTTACTTTAATTTTATCTAAAAGAAAAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAA‑‑GCTGTCATACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2498053‑2497906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATACCAACAAAGTAGTGTAACCATCCTGCATGTACTGGATTGATTGAAA > USA300TCH1516_ALE/2497975‑2498108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |