New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2679162 =	83 (0.920)	5 (0.060)	4/266	13.8	5.9%	intergenic (+34/‑355)	USA300HOU_RS13790/ssaA2_4	hypothetical protein/Staphylococcal secretory antigen ssaA2
	?	USA300TCH1516_ALE	2679186 =	80 (0.930)					intergenic (+58/‑331)	USA300HOU_RS13790/ssaA2_4	hypothetical protein/Staphylococcal secretory antigen ssaA2
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAAATATTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAA  >  USA300TCH1516_ALE/2679023‑2679300                                                                                                                                            |                                                                                                                                           tGAAATATTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTa                                                                                                                                           <  1:207177/141‑1 (MQ=255)    aaTATTGTCATATTTTCTAACATATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCCACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAgcg                                                                                                                                        <  4:206119/141‑1 (MQ=255)     atatTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAgcgc                                                                                                                                       >  3:271984/1‑141 (MQ=255)     atatTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAgcgc                                                                                                                                       >  3:271876/1‑141 (MQ=255)     atatTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTCTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTCgcgc                                                                                                                                       >  1:576069/1‑141 (MQ=255)      tatTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGct                                                                                                                                      <  1:374308/141‑1 (MQ=255)      tatTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGct                                                                                                                                      <  2:72697/141‑1 (MQ=255)         tGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCCCTg                                                                                                                                   <  1:626164/141‑1 (MQ=255)          gTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACTGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGa                                                                                                                                  >  2:284071/1‑141 (MQ=255)            cATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGAtt                                                                                                                                >  1:295150/1‑141 (MQ=255)            cATATTTTCGAACAAATCAATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTTAAACAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAAAGTTCTGAtt                                                                                                                                >  4:63569/1‑141 (MQ=255)            cATATTTTCGAACAAANCCATGTCCTGAANGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGAtt                                                                                                                                >  3:168311/1‑141 (MQ=255)                    cGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTTCAGGgcg                                                                                                                        <  2:672687/141‑1 (MQ=255)                    cGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGgcg                                                                                                                        >  2:402645/1‑141 (MQ=255)                    cGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGgcg                                                                                                                        >  4:264771/1‑141 (MQ=255)                     gAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGgcgc                                                                                                                       <  1:144048/141‑1 (MQ=255)                      aaCAAATCCATGTCCTGAAAGCATTTCAGTATCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCt                                                                                                                      <  4:129747/141‑1 (MQ=255)                      aaCAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCt                                                                                                                      <  1:337525/141‑1 (MQ=255)                       aCAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTa                                                                                                                     >  1:199346/1‑141 (MQ=255)                        cAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTAt                                                                                                                    >  2:432208/1‑141 (MQ=255)                        cAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTAt                                                                                                                    >  2:352807/1‑141 (MQ=255)                            tCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTAttttt                                                                                                                <  1:260764/141‑1 (MQ=255)                            tCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTAttttt                                                                                                                <  1:432208/141‑1 (MQ=255)                             ccATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTa                                                                                                               >  1:504695/1‑141 (MQ=255)                              cATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTaa                                                                                                              >  2:191487/1‑141 (MQ=255)                                  tCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGtt                                                                                                          >  4:39418/1‑141 (MQ=255)                                    cTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTAt                                                                                                        >  1:225402/1‑141 (MQ=255)                                       aaaGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGc                                                                                                     >  1:404369/1‑141 (MQ=255)                                          gCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTAc                                                                                                  >  3:232960/1‑141 (MQ=255)                                             tatcAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACCATGATACATGAATACATAGAGACACATCATCTCATGTTAGCGCTCTGCTTGCAGGGCGCTCTTTTTAATGTTATTGCTACAtt                                                                                               >  4:278516/3‑141 (MQ=255)                                              ctcAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACAttt                                                                                              >  2:477003/1‑141 (MQ=255)                                               tcAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTa                                                                                             >  3:275500/1‑141 (MQ=255)                                                 aGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGt                                                                                           <  1:363569/141‑1 (MQ=255)                                                   tACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGtat                                                                                         <  2:80535/141‑1 (MQ=255)                                                    aCCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATTTATACAGGGATACACACCAACTCAGGCTAGCGCTCTTTTTGCATGTCTCTATTTTGAAGGTTATTGCTACATTTAGtata                                                                                        >  1:678560/1‑141 (MQ=255)                                                    aCCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGtata                                                                                        >  2:521790/1‑141 (MQ=255)                                                          aaTTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGa                                                                                  <  2:529229/141‑1 (MQ=255)                                                           aTTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGAt                                                                                 >  3:127975/1‑141 (MQ=255)                                                             tAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTg                                                                               <  1:230467/141‑1 (MQ=255)                                                             tAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTg                                                                               <  4:32898/141‑1 (MQ=255)                                                              aaaCGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGAtggt                                                                              >  2:239530/1‑138 (MQ=255)                                                                 cGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTAt                                                                           >  2:116698/1‑141 (MQ=255)                                                                 cGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTAt                                                                           <  2:195845/141‑1 (MQ=255)                                                                   ggCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTAttt                                                                         <  4:205911/141‑1 (MQ=255)                                                                   ggCACTATCAGTTTTCAACCAATTCACAAATGTAAAATGATACATGAATACATGGAGTCAGATCATCTCATGTTAGCGCTTTCATTGCAGGGCGCTATTTTTTGTGTTATTGCTAAATTTAGTATATTGTGATTTCTAttt                                                                         <  4:146225/141‑1 (MQ=255)                                                                    gCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATGTAGTATATTGTGATTGCTAtttt                                                                        >  2:8044/1‑141 (MQ=255)                                                                     cACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATtttc                                                                       <  2:128686/141‑1 (MQ=255)                                                                     cACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATtttc                                                                       >  1:501608/1‑141 (MQ=255)                                                                        tATCAGTTTTCAACCAATTCACGAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATtttcttt                                                                    >  2:652546/1‑141 (MQ=255)                                                                           cAGTTTTCAACCAATTCACAAATGTACAATGATATATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCaa                                                                 >  4:249318/1‑140 (MQ=255)                                                                           cAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAg                                                                 >  3:99434/1‑141 (MQ=255)                                                                           cAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAg                                                                 >  1:439296/1‑141 (MQ=255)                                                                              ttttCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTta                                                              >  1:559704/1‑141 (MQ=255)                                                                                 tCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAg                                                           >  1:672768/1‑141 (MQ=255)                                                                                  cAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGa                                                          <  1:275950/141‑1 (MQ=255)                                                                                   aaCCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGaa                                                         >  1:164311/1‑141 (MQ=255)                                                                                     ccAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAAcc                                                       >  3:231088/1‑141 (MQ=255)                                                                                      cAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCa                                                      <  3:61616/141‑1 (MQ=255)                                                                                      cAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCa                                                      >  4:98661/1‑141 (MQ=255)                                                                                       aaTTCACAAATGTACAATGATACATGAATACATGGGGTCACATAATCTCATGTCAGAGCTTAGATAGCAGGGCGCTATTTTTAATGTTATTGCTACATTTCGTATATTGTGATGGCTATTTTCTGTGAGTtatacatcgtg                                                     >  2:678883/1‑134 (MQ=255)                                                                                        aTTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATg                                                    <  4:168311/141‑1 (MQ=255)                                                                                          tCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTa                                                  <  3:233750/141‑1 (MQ=255)                                                                                            acaAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTAcc                                                <  1:19411/141‑1 (MQ=255)                                                                                              aaaTGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCtt                                              >  1:522561/1‑141 (MQ=255)                                                                                              aaaTGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCtt                                              >  1:558972/1‑141 (MQ=255)                                                                                                aTGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCtttt                                            <  2:515241/141‑1 (MQ=255)                                                                                                   tACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCttttttt                                         <  1:2101/141‑1 (MQ=255)                                                                                                    aCAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCtttttttt                                        <  1:363499/141‑1 (MQ=255)                                                                                                       aTGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTaaa                                     >  2:498866/1‑141 (MQ=255)                                                                                                       aTGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTaaa                                     >  1:93227/1‑141 (MQ=255)                                                                                                         gATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATc                                   <  4:168258/141‑1 (MQ=255)                                                                                                              aTGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCGTGTACCTTTTTTTTAAATCAtttt                              <  4:101383/141‑1 (MQ=255)                                                                                                               tGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTta                             >  1:121560/1‑141 (MQ=255)                                                                                                               tGAATACATAGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTta                             <  2:286407/141‑1 (MQ=255)                                                                                                                 aaTACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTtata                           >  4:287811/1‑141 (MQ=255)                                                                                                                        ggAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTccc                    >  3:10833/1‑141 (MQ=255)                                                                                                                            tCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTa                >  2:600152/1‑141 (MQ=255)                                                                                                                               catcatCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAata             >  1:619556/1‑141 (MQ=255)                                                                                                                                 tcatcTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATc           <  1:671633/141‑1 (MQ=255)                                                                                                                                  catcTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAATTCATTTTATATTTTCCCACTAATATcc          >  2:635054/1‑141 (MQ=255)                                                                                                                                   atcTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATTATTTTATATTTTCCCACTAATATCCg         >  4:97201/1‑141 (MQ=255)                                                                                                                                         tGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATTATTTTATATTTTACCACTAATATCTGCTGTTa   >  2:40069/1‑141 (MQ=255)                                                                                                                                          gTTAGCGCTCGGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTTTTTTCTTTCAGTTATACAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTaa  <  2:502067/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                           TGAAATATTGTCATATTTTCGAACAAATCCATGTCCTGAAAGCATCTCAGTACCTGTAATTAAACGGGCACTATCAGTTTTCAACCAATTCACAAATGTACAATGATACATGAATACATGGAGTCACATCATCTCATGTTAGCGCTCTGATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAA  >  USA300TCH1516_ALE/2679023‑2679300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.