mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,798,959 | 0 | G | A | 53.6% | ‑4.5 / 39.8 | 28 | D397D (GAC→GAT) | icd | Isocitrate dehydrogenase [NADP] |
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 43.2% | 41.5 / 100.3 | 81 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 32.1% | 61.7 / 47.9 | 53 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 32.1% | 90.1 / 49.3 | 53 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 1,431,769 | 0 | A | G | 23.8% | 70.1 / 24.4 | 42 | K340R (AAA→AGA) | lysC | Aspartokinase |