Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2241155	2241177	23	2 [1]	[1] 2	murA2	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase 2

GGTAAACCAATCACACATTTTTTAAATCTACCTAACATGGCACCCATCATATAGTATGAAGCACGTAATGATTCAACTTTATTATTTGGTAATGCAGCATTTTGTATTTCAGTTGTATCAACTTCTAATTCCGTACCATTTAGTGATGCCTTA  >  USA300TCH1516_ALE/2241014‑2241166                                                                                                                                             |             ggTAAACCAATCACACATTTTTTAAATCTACCTAACATGGCACCCATCATATAGTATGAAGCACGTAATGATTCAACTTTATTATTTGGTAATGCAGCATTTTGTATTTCAGTTGTATCAACTTCTAATTCCGTACCAttt              >  1:80628/1‑141 (MQ=255)             acacaTTTTTTAAATCTACCTAACATGGCACCCATCATATAGTATGAAGCACGTAATGATTCAACTTTATTATTTGGTAATGCAGCATTTTGTATTTCAGTTGTATCAACTTCTAATTCCGTACCATTTAGTGATGCCTTa  <  2:117907/141‑1 (MQ=255)                                                                                                                                             |             GGTAAACCAATCACACATTTTTTAAATCTACCTAACATGGCACCCATCATATAGTATGAAGCACGTAATGATTCAACTTTATTATTTGGTAATGCAGCATTTTGTATTTCAGTTGTATCAACTTCTAATTCCGTACCATTTAGTGATGCCTTA  >  USA300TCH1516_ALE/2241014‑2241166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑