Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2241155	2241177	23	2 [1]	[1] 2	murA2	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase 2

ATCTTCTAATAAACTCACTAAAGTTTTAACATCAGAGATTTGCGGTAACCCTTCTAATTTCACATGTCCTTGAGCTAATAATGTTGCAGGAATGATAGCTACAGCACTGTTTTTCGCGCCACTGATATTAACTTCCCCATTTAG  >  USA300TCH1516_ALE/2241175‑2241318    |                                                                                                                                             aTCTTCTAATAAACTCACCAAAGTTTTAACATCAGCGATTTGCGGTAACCCTTCTAATTTCACATGTCCTTGAGCTAATAATGTTGCAGGAATGCTAGCTACAGCACTGTTTTTCGCACCACTGATATCAACTTCCCCAtt     >  2:82751/1‑141 (MQ=255)    ttctAATAAACTCACTAAAGTTTTAACATCAGAGATTTGCGGTAACCCTTCTAATTTCACATGTCCTTGAGCTAATAATGTTGCAGGAATGATAGCTACAGCACTGTTTGTCGCGCCACTGATCTTAACTTCCCCATTTAg  >  1:92267/1‑141 (MQ=255)    |                                                                                                                                             ATCTTCTAATAAACTCACTAAAGTTTTAACATCAGAGATTTGCGGTAACCCTTCTAATTTCACATGTCCTTGAGCTAATAATGTTGCAGGAATGATAGCTACAGCACTGTTTTTCGCGCCACTGATATTAACTTCCCCATTTAG  >  USA300TCH1516_ALE/2241175‑2241318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑