New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 613910	66 (1.380)	4 (0.080)	4/296	5.0	5.7%	coding (2222/2844 nt)	sdrC	Serine‑aspartate repeat‑containing protein C
	?	USA300TCH1516_ALE	622287 =	68 (1.440)					coding (2850/3465 nt)	sdrE	Serine‑aspartate repeat‑containing protein E
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACACAAACAGTTACAAATACAACTGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGAC  >  USA300TCH1516_ALE/622137‑622437                                                                                                                                                       |                                                                                                                                                       aaCACAAACAGTTACAAATACAACTGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgac                                                                                                                                                        >  1:119145/1‑151 (MQ=255) aaCACAAACAGTTACAAATACAACTGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgac                                                                                                                                                        <  1:386483/151‑1 (MQ=255)    acaAACAGTTACAAATACAACTGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactca                                                                                                                                                     >  1:266022/1‑151 (MQ=255)                    aCAACTGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagact                                                                                                                                     >  2:224791/1‑151 (MQ=255)                    aCAACTGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagact                                                                                                                                     >  2:26523/1‑151 (MQ=255)                         tGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagactcagac                                                                                                                                >  1:443660/1‑151 (MQ=255)                         tGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagactcagac                                                                                                                                >  1:271822/1‑151 (MQ=255)                           aaGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAAAAACAAAACATGATGAATTCACACTTGATAACGGATACTTCGAAGAAGATACATAAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagactcagacag                                                                                                                              >  2:253376/1‑151 (MQ=21)                            aGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagactcagacagc                                                                                                                             >  1:51278/1‑151 (MQ=255)                               tgatAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagactcagacagcgac                                                                                                                          <  1:225939/151‑1 (MQ=255)                               tgatAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTgactcagacagcgactcagactcagacagcgac                                                                                                                          <  1:166241/151‑1 (MQ=255)                                   aaaGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGactcagacagcgactcagactcagacagcgactcag                                                                                                                      >  2:137541/1‑151 (MQ=255)                                     aGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACtcagacagcgactcagactcagacagcgactcagac                                                                                                                    >  2:234926/1‑151 (MQ=255)                                      gATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTcagacagcgactcagactcagacagcgactcagact                                                                                                                   >  2:50815/1‑151 (MQ=255)                                      gATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTcagacagcgactcagactcagacagcgactcagact                                                                                                                   >  2:204133/1‑151 (MQ=255)                                      gATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTcagacagcgactcagactcagacagcgactcagact                                                                                                                   >  2:245661/1‑151 (MQ=255)                                          cAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGAcagcgactcagactcagacagcgactcagactcaga                                                                                                               >  1:268068/1‑151 (MQ=255)                                          cAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGAcagcgactcagactcagacagcgactcagactcaga                                                                                                               >  1:268078/1‑151 (MQ=255)                                              tggtggCGAAGTTGACGTAGCAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGt                                                                                                           >  1:406735/1‑151 (MQ=255)                                              tggtggCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGt                                                                                                           >  1:45801/1‑151 (MQ=255)                                              tggtggCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGt                                                                                                           >  1:349256/1‑151 (MQ=255)                                                  gnCGAAGTTGACGTAACAATTACGGATCATGATGATTTCNCACTTGNTNACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTgatt                                                                                                       >  1:74895/1‑151 (MQ=255)                                                  ggCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTgatt                                                                                                       >  1:75037/1‑151 (MQ=255)                                                           gACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGattcagattcag                                                                                              <  1:199405/151‑1 (MQ=255)                                                               tAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAg                                                                                          >  1:26714/1‑151 (MQ=255)                                                               tAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGAGTCAGACAg                                                                                          >  2:218115/1‑151 (MQ=255)                                                               tAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGAGATTCAGATTCAGACAg                                                                                          >  2:41232/1‑151 (MQ=255)                                                                    aTTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACt                                                                                     <  1:396343/151‑1 (MQ=255)                                                                      tACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGACTCAGATTCAGACAGCGACtca                                                                                   >  1:219984/1‑151 (MQ=255)                                                                       aCGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcag                                                                                  >  2:451584/1‑151 (MQ=255)                                                                        cGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcaga                                                                                 >  1:461993/1‑151 (MQ=255)                                                                              atgatgATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcaga                                                                           <  2:181703/151‑1 (MQ=255)                                                                              atgatgATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcaga                                                                           <  2:327012/151‑1 (MQ=255)                                                                              atgaagATTTCACACTTGAAAACGGATACTTCGACGCAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcaga                                                                           <  2:415327/151‑1 (MQ=255)                                                                               tgatgaTTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcagat                                                                          <  1:55364/151‑1 (MQ=255)                                                                               tgatgaTTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcagat                                                                          <  2:401044/151‑1 (MQ=255)                                                                               tgatgaTTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcagat                                                                          <  1:45718/151‑1 (MQ=255)                                                                               tgatgaTTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGAGTCAGAGTCAGACAGCGACtcagattcagaa                                                                          >  2:241246/1‑150 (MQ=255)                                                                                gatgatTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATa                                                                         <  1:54122/151‑1 (MQ=255)                                                                                    atTTCACACTTGATAACGGGTACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGa                                                                     >  1:407332/1‑151 (MQ=255)                                                                                     tttCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGAc                                                                    >  1:336084/1‑151 (MQ=255)                                                                                          cacTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGa                                                               >  2:4836/1‑151 (MQ=255)                                                                                           acTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGAt                                                              <  1:338789/151‑1 (MQ=255)                                                                                                 tAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACAGAGACTCAGACAGTGATTCAGATTCAGAGAGCGACGCAGCGTCAGAGAGCGGCTCAGAGTCGGAc                                                        >  2:62212/1‑151 (MQ=25)                                                                                                  aaCGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACa                                                       >  2:61176/1‑151 (MQ=255)                                                                                                  aaCGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACa                                                       >  2:308424/1‑151 (MQ=255)                                                                                                  aaCGGATACTTCGAAGAAGATACATAAGCCCGCGATTCATACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGAGTCGGACa                                                       >  2:463440/1‑151 (MQ=255)                                                                                                    cGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGc                                                     <  2:430487/151‑1 (MQ=255)                                                                                                    cGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGc                                                     <  2:309495/151‑1 (MQ=255)                                                                                                        tacctagaagaaGATACATCAGACAGTGCTTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCCGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGAtt                                                 <  2:43917/145‑1 (MQ=255)                                                                                                        tACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGAtt                                                 <  1:190036/151‑1 (MQ=255)                                                                                                          cTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCa                                               >  1:71875/1‑151 (MQ=255)                                                                                                           ttCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAg                                              >  1:346548/1‑151 (MQ=255)                                                                                                           ttCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAg                                              >  1:283049/1‑151 (MQ=255)                                                                                                            tCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGACTCGGGTTCAGACAGCGATTCAGa                                             >  2:297131/1‑151 (MQ=255)                                                                                                               aagaagATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTc                                          >  1:7577/1‑151 (MQ=255)                                                                                                                   agaTACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGAt                                      <  1:149750/151‑1 (MQ=255)                                                                                                                       aCATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCg                                  >  1:335804/1‑151 (MQ=255)                                                                                                                       aCATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCg                                  >  1:393634/1‑151 (MQ=255)                                                                                                                       aCATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCg                                  >  1:138543/1‑151 (MQ=255)                                                                                                                       aCATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCg                                  >  1:156366/1‑151 (MQ=255)                                                                                                                         aTCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGAc                                <  2:93196/151‑1 (MQ=255)                                                                                                                             gACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCTACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACtcag                            >  1:202743/1‑151 (MQ=255)                                                                                                                                     ttCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcagat                    <  1:101659/151‑1 (MQ=255)                                                                                                                                     gtCAGACCCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCCACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcagat                    <  2:121388/150‑1 (MQ=255)                                                                                                                                        aGACTCAGATAGTGACTCAGACAGCGACTCAGACGCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGc                 <  2:45801/151‑1 (MQ=255)                                                                                                                                                 tAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATtcagac        >  1:35526/1‑151 (MQ=255)                                                                                                                                                  aGTGAACCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGCCAGCGATTCCGATTCAGATCGCGATTCAGATTCAGACAGCGACTCAGATGCGGACAGCGATTCAGACTCAGAACGCGACTCACATCCAGACCGCGATacacact       >  2:368810/1‑151 (MQ=11)                                                                                                                                                      actcagacagcgactcagactcagacagcgactcagACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATtcagactcaga   <  1:253376/151‑1 (MQ=255)                                                                                                                                                      actcagacagcgactcagactcagacagcgactcagACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATtcagactcaga   <  1:453933/151‑1 (MQ=255)                                                                                                                                                       ctcagacagcgactcagactcagacagcgactcagaCTCAGACAGTGATTCGGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATCCAGACTCAGATAGAGACTCAGATTCAGATAGCGATtcagactcagac  >  2:177425/1‑151 (MQ=255)                                                                                                                                                       ctcagacagcgactcagactcagacagcgactcagaCTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATtcagactcagac  >  2:279472/1‑151 (MQ=255)                                                                                                                                                       ctcagacagcgactcagactcagacagcgactcagaCTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATtcagactcagac  >  2:164690/1‑151 (MQ=255)                                                                                                                                                       |                                                                                                                                                       AACACAAACAGTTACAAATACAACTGAAGATGATAAAGATGCAGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAACGGATACTTCGAAGAAGATACATCAGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGAC  >  USA300TCH1516_ALE/622137‑622437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.