| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 52495 = | 95 (0.890) | 125 (1.180) +T |
3/278 | 13.8 | 58.9% | intergenic (+105/‑568) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 52988 | 81 (0.760) | intergenic (+598/‑75) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 129 total aligned reads displayed.
TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/52633‑52495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG < USA300TCH1516_ALE/52988‑52880 | TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGAGATTACTACGATGATTTCAACAGATTCCTCTGATTATTTTACGTG > 1:574835/1‑141 TCAATCTATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATTATTTCAAACGATTCCCCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGAT < 2:726365/141‑1 CAAACGATTCCTCTGTTTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTAAAACGATTCCTCTGATTATTTCACGTGATT > 1:894920/1‑141 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTGCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT > 1:853775/1‑141 AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAACCGATGCCTCTGCTTATTTCACGTGATTT > 1:568441/1‑141 AAACCATTCCTCTGATTATTGCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT < 2:1049055/141‑1 ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCCCTGAATATTTCACTTGATTTTC > 2:1202415/1‑141 CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCa > 1:85276/1‑140 CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG < 2:75697/141‑1 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTATGATTATTTCACGTGATTTTCGCGTGATTACTACGATGATTTCAAACGATCCCTCTGACTATTTCACGTGATTTTCGCG < 1:779308/141‑1 CCTCTGATTATTTCACGTGATTTTCGCGCGATTCCTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATCATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGA < 2:600514/141‑1 TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTTGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATT > 1:810860/1‑141 ATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTA < 1:997298/141‑1 TTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAt > 1:1165063/1‑140 TTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAC > 1:434516/1‑141 TTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGAGTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTGAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTtttac > 1:175429/1‑136 TTATTTCACCTGATTTTCGCGCGATTACTACGATGATTTCAAACCATTCCTCTGATTATTTCACGTGATTTTCGCGTGATTACTCGGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAC < 2:376106/141‑1 TTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCCCGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT < 1:208284/141‑1 TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGGTTATTTCAGGTGATTTTCGCGAGATTACTACGATGATTGCAAACGATTCCCCTGATTGTCTCACGTGATTTTCACTGGATTACTACGATG > 1:78733/1‑141 TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTGCTCTGATTATTTCACGTGATTTTCGCTCGATTACTACGATt > 1:1166509/1‑140 TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTATTACGATG > 1:1157798/1‑141 cctGTGTTTTTTGCGCGATTACTCCGCTGATTTCACACGTTTCCTCTTTTTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAATCGATTCCTCTAATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT < 2:68584/138‑1 CACCTGATTTTCGCGCGATTCCTACGATGCTTTCAAACGATTCCTCTGATTATTTCACGTGATGTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT < 1:585802/141‑1 GATTTTCGCGCTATTCCTACGATGTTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA < 2:375456/141‑1 GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA > 1:52572/1‑141 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTTGGGCGATTTTTAGGATGATTGCAAA > 1:963001/1‑141 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA < 1:1147154/141‑1 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA > 1:493837/1‑141 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA < 1:626547/141‑1 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTATTACGATGATTTCAAAC > 1:1041070/1‑141 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC < 1:1161904/141‑1 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC > 1:1065395/1‑141 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCGGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC > 1:458006/1‑141 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACTATGATTTCAAACTATTCCTCTCATTATTTCACGTTATTTTCACTCGATTATTATTATGTTTTTAAAtt > 2:519579/1‑139 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC > 1:239931/1‑118 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC < 2:239931/118‑1 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT < 1:396251/112‑1 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT > 2:396251/1‑112 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGGGATTTTCGCGCGATTACTACGATGATATAAAACGATTCCTCTGATTATTTCACGTGATTTTTGCGCGATTTTTATGATGCTTTCAAAaa > 2:268628/1‑139 TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCTCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGA > 1:738842/1‑141 TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGt > 1:201484/1‑140 TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT > 2:1081946/1‑106 TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT < 1:1081946/106‑1 TCGCGCGATTACTACGATGATTTCAAACGATTCGTCTGATTATTTCACGTGATTTTCGCGGGATTTTTAGGATGATTTGAAACGATTGATCTGATTATTTCACGTGATTTTTGCGCGATTTTTACGATGATTTCAAAGGAT > 2:594926/1‑141 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT > 2:246857/1‑103 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT < 1:246857/103‑1 CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGTGATTTCTAGGATTATTTCAAACTATTCC > 1:309385/1‑141 GCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTTTACGATGTTTTCAAACGATTCCT > 2:956320/1‑141 CGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTTTACGATGATTTAAAGCGTTTCCTt > 1:617764/1‑140 CGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTAATACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTTTCCGAGGATTTTAAACGATTCtcc > 1:198491/1‑138 ATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTG < 1:614875/141‑1 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAGGATGATTTCAAACGATTCCTCTGATT > 1:736329/1‑141 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGTTTTCAAACGATTCCTCTGATT > 1:290507/1‑141 TACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCATCTGATTATTTCACGTGATTTTCGCTCAATTTTTACGATGATTTGATCGGATTCTTCTGATTtt > 2:1142107/1‑139 GATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCTCGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTC < 1:1171653/141‑1 GATGATTTCAAACGATTCCTCTGATTATGTCACGTGATTTTCGCGCGATTACTAAGATGATTTCAAACGATTCCTCTGAGTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTC > 1:777604/1‑141 GATTTCATACGATTCCTCTCATTATTTCACGTGGTTTTCACGCGATTACTACGTTCATTTCAAACGATTCCTCTGATTATTTCACGTGACTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG < 2:660386/141‑1 GATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG > 1:1134867/1‑141 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTTTACGATATTTTTAAAGATTTCCTTTCATTATTTCACttt > 2:1110205/1‑138 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACACGATTATTACGATTATTTCACACGTTTCCTCTCATTCTTTtctgtt > 2:435659/1‑135 TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTAACGCGAT > 1:907892/1‑141 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTCTAGGATGATTTACAGCGGTTCCTCTGATCATTTCAacgggtt > 2:894893/1‑134 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTC < 2:106922/123‑1 CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATG < 1:1010945/102‑1 CTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT < 2:279762/74‑1 GATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT < 1:316696/73‑1 TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTA < 2:1081548/81‑1 ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC < 2:751500/98‑1 ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC > 1:751500/1‑98 CGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGC < 1:168238/67‑1 ggGATTTTCGCGCTATTACTACGATGTTCTCAAACCGTTCCTCTTATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGAGTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTC < 2:492647/139‑1 GTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTC < 1:189769/95‑1 GTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTC > 2:189769/1‑95 GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT < 1:1039618/78‑1 GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT > 2:1039618/1‑78 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCT < 1:119456/94‑1 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT < 1:1119539/68‑1 TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT < 2:87198/73‑1 TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT > 1:87198/1‑73 TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATT < 1:454162/65‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCA < 1:492378/79‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCA > 2:492378/1‑79 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTCTTTCAGGCGAGTTTCGCGCGATTACTAGTATGTCTTCAAACAATTC > 2:846283/1‑141 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTC > 2:147118/1‑77 GCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA < 2:836273/90‑1 GCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGGGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA > 1:836273/1‑90 ACTACGATGATTTCAAACGATTCCTGTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT > 1:601468/1‑76 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT < 2:601468/76‑1 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGC < 1:260918/49‑1 TACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC < 2:272385/91‑1 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCG > 1:239633/1‑95 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA < 1:167898/73‑1 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT > 2:743908/1‑85 AACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCT < 2:865519/67‑1 ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTC < 1:818403/65‑1 ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCG < 2:672273/36‑1 ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCG > 1:672273/1‑36 CCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATT < 2:197082/64‑1 CCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA < 1:929751/50‑1 TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG < 2:535641/61‑1 | TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/52633‑52495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG < USA300TCH1516_ALE/52988‑52880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |