| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 52495 = | 95 (0.890) | 125 (1.180) +T |
3/278 | 13.8 | 58.9% | intergenic (+105/‑568) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 52988 | 81 (0.760) | intergenic (+598/‑75) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGA > USA300TCH1516_ALE/52356‑52631 | tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg < 2:537948/141‑1 (MQ=255)tgttTTTTAAAGCATTAGATGCATTAAAGAAATCGTTTTTCCATGAAACAGATCT‑TTGTCCTGATTAAAATTAATTAATATTAAGCCACGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg < 2:849303/141‑1 (MQ=255) tttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAGATcgctgtaaa > 2:840478/1‑135 (MQ=255) ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaaa > 2:810860/1‑140 (MQ=255) ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat > 2:1041070/1‑141 (MQ=255) ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat > 2:588803/1‑141 (MQ=255) tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata > 1:1202415/1‑141 (MQ=255) tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAAAGTTGTGGAGATCGCGTGAgatg > 1:112893/1‑140 (MQ=255) tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAAAGAAGTCTTAAACGTTCTGAAAAACGAAAAATGTTGTGGAAATCGCGTGAaata > 2:85276/1‑141 (MQ=255) aGCATTAGATGCCTTAAAGAAATAGTTTTCCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATc > 2:912365/1‑141 (MQ=255) gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa > 2:458006/1‑141 (MQ=255) gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa > 2:1065395/1‑141 (MQ=255) aTTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagg > 2:309385/1‑140 (MQ=255) ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag < 2:1087813/141‑1 (MQ=255) tGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATc > 2:339960/1‑141 (MQ=255) tGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATAGAGTGAAGTAATCAGAGGAATc > 1:42344/1‑141 (MQ=255) tGCCTTAAAGAAATAGATTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATAAGAGGAAtg > 1:594926/1‑140 (MQ=255) ccTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGt < 2:652825/141‑1 (MQ=255) ttAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt < 1:274786/141‑1 (MQ=255) aaaGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa > 2:434516/1‑141 (MQ=255) aaaGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa > 2:1165063/1‑141 (MQ=255) ttttttCACTTAAA‑ATATTTATAGATATAATTAAAATTAATTAATCTTAAGTCAGGTTAATCTAGCTTTAATCGTTCTGATGTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGATGAAACGTTTGAAatcatcct < 2:510801/140‑3 (MQ=37) atttttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt < 1:1044741/140‑1 (MQ=255) tttttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta > 2:1134867/1‑141 (MQ=255) tttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagt > 2:1157798/1‑141 (MQ=255) tttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCgtagt > 2:736329/1‑141 (MQ=255) tttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGATGTGGAAATCGCGTGAACTAATCAGAGGAATCGTTTGAAATCATCgtagt > 2:380469/1‑141 (MQ=255) ttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta > 1:268628/1‑141 (MQ=255) tCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa > 2:986367/1‑141 (MQ=255) aCTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTATTc < 2:204097/141‑1 (MQ=255) aCTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc > 1:655051/1‑141 (MQ=255) gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:1128821/1‑141 (MQ=255) gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg < 1:530455/141‑1 (MQ=255) gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg < 2:1114066/141‑1 (MQ=255) gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg < 1:912365/141‑1 (MQ=255) gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:841195/1‑141 (MQ=255) gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:447493/1‑141 (MQ=255) gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGGGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg < 1:451046/141‑1 (MQ=255) attatTTATAGATATAATTAAAATTACATAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGCTATCGCGCGa < 1:883842/139‑1 (MQ=255) tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa < 2:116801/141‑1 (MQ=255) tatTTAAAGATATAATTAAAATGAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa < 1:426307/141‑1 (MQ=255) atTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa < 2:874756/141‑1 (MQ=255) aaatataGACATAATTAAAATTAATTAATATTAAGCCAGGATCATGTAGTCGTAAAAGAACAAAAATAAGAAAAATGTTGGGGAAATCGCGTGAAATAATCACAGGAATCGTTTGAAATCATCGTAGTTATCGCGCAaaaa < 2:379538/138‑1 (MQ=21) ttATAGTTATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc < 2:81034/141‑1 (MQ=255) ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc < 2:916473/141‑1 (MQ=255) ataGATATAATTAAAATTAATTAATATTAAGAAAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATAAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCAc > 1:593569/1‑141 (MQ=255) ataGATATAATTAAAATTAACTAATAATAAGCCAGGATAAGGTAATATTAATCGATCTGTAAAACAAAAAAAGGTGCGGGAAGCGCGTGCAATAATTAGAGGAATCGTTTGAAGTCTCCGTAGGAATCGCGCGAAAATAAc > 2:198491/1‑141 (MQ=255) atatAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa < 2:305048/141‑1 (MQ=255) atatAATTAAAATTAAATAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa < 1:534515/141‑1 (MQ=255) ataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa < 1:981564/141‑1 (MQ=255) taATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaat > 1:687269/1‑141 (MQ=255) aaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCa > 1:1142107/1‑141 (MQ=255) aattaattAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTATTCGCGCGAAAATCACGTGAAATAATCaga < 1:885533/141‑1 (MQ=255) aattaattAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga < 1:175629/141‑1 (MQ=255) aataagttaatAATAAGCCCGGATAAGGTATTCGTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga < 1:870094/135‑1 (MQ=21) aaataattaagATTAAGCCAGGATGATGGAGTCTTAATCGTTCGGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga < 1:546034/138‑1 (MQ=25) ataattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg < 2:742610/140‑1 (MQ=255) attaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt < 1:998911/141‑1 (MQ=255) aatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAACCAGAGGAATCgg > 1:1015631/1‑140 (MQ=255) atTAAACCAGGTTAATGTAGTCTTAATCGTTCTGAAATACGTACGATGTTGTAGCAATCACCTAAAATAATCAGAGGACTCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg < 2:1159207/141‑1 (MQ=17) aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTTTGGTAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa < 2:513415/141‑1 (MQ=255) aggcaagATAATGTAGTATTAAACCTTAAGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat < 1:31200/135‑1 (MQ=17) aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat < 1:191272/141‑1 (MQ=255) aGCCAAGATTATGTAGTCGTAATCGTTCTGAAATACGAAAAATGTTTTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat < 2:739234/141‑1 (MQ=255) cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGTGGAATCATTTGAAatcat > 1:749065/1‑141 (MQ=255) cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCAAGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat > 1:1132482/1‑141 (MQ=255) aTAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta > 1:163355/1‑141 (MQ=255) tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag > 2:666676/1‑141 (MQ=255) tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag > 1:724221/1‑141 (MQ=255) tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGAGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag > 1:177999/1‑141 (MQ=255) tAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc > 1:274511/1‑141 (MQ=255) cTTAATCGTACTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc < 1:1121268/141‑1 (MQ=255) ttAAACGTACTGAAATACGAAAAATGTGGTGAAAATCGGGTGAAATAATCAAGGGAAACGTTTGAAATCATCGGAGTAATCGTGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg < 2:539960/141‑1 (MQ=14) tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa < 1:890275/141‑1 (MQ=255) tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAA‑CCCGCGAAAATTCCGGGGAATAATCAGAGGAAACGGTTTGAATCAACGTAGGAATcgccggga > 2:290247/1‑136 (MQ=17) tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGT‑ATCGCGCGAAAATCACGGGAAATAATCAGAGGAATAGTTTGGAATCATCGTAGTAATCGCGGGaa > 2:290507/1‑141 (MQ=18) aaTCTTTCTGAAATACGAAAAATTTTTTAGAAATCGCGTGAAATAATCAGCGGAATCGTTTGAAATAATCGGAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa < 2:822620/141‑1 (MQ=14) gTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc > 1:606754/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTACTCGCGCGAAAATCACGTGa > 1:684247/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 1:846863/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 1:1212525/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 2:738842/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAACTCACGGGa > 1:730158/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAACGTTTGAAATCAGCGTAGTAATCGCGCGAAAATCACGTGa > 2:52572/1‑141 (MQ=255) aTACGAAAAATGTTGCGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa > 1:894893/1‑141 (MQ=255) tACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaat > 1:779320/1‑141 (MQ=255) aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata > 2:116518/1‑141 (MQ=255) aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata > 1:1073781/1‑141 (MQ=255) aCGAAAAATGTTGTGGAAATAGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGACTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata > 1:846283/1‑141 (MQ=255) gttgtAGAAATCTCGTGTAATAATCAGCGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa < 1:617718/141‑1 (MQ=255) ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCCGAGGaa > 1:49218/1‑141 (MQ=38) tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa > 2:239633/1‑95 (MQ=39) gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa > 1:701822/1‑61 (MQ=37) tgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa > 2:271508/1‑58 (MQ=35) cggAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa < 1:271508/57‑1 (MQ=18) aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt < 1:666676/141‑1 (MQ=32) aTCGCGTTAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa < 1:907892/141‑1 (MQ=17) aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg < 2:743908/85‑1 (MQ=33) aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg > 1:743908/1‑85 (MQ=35) | TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGA > USA300TCH1516_ALE/52356‑52631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |