New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 20439 =547 (0.980)63 (0.120) 19/148 NT 11.6% coding (632/675 nt) USA300HOU_pUSA300HOUMR0027 IS431mec transposase
?CP000731 20463 = 457 (0.890)coding (608/675 nt) USA300HOU_pUSA300HOUMR0027 IS431mec transposase

Only 100 of 142 total aligned reads displayed.

ATATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/20534‑20439
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTA  >  CP000731/20463‑20552
                                                                                                                                                                                          
ATATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATC                                                                                                 >  2:2839952/1‑91
ATATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATC                                                                                                 <  1:1304216/91‑1
ATATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATC                                                                                                 >  2:2640446/1‑91
ATATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATC                                                                                                 >  1:2932958/1‑91
ATATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATC                                                                                                 >  2:1922563/1‑91
 TATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCT                                                                                                <  1:3379193/91‑1
 TATCAAAGTATCAATAAGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCT                                                                                                >  2:3500370/1‑91
  ATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTA                                                                                               >  2:946551/1‑91
  ATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTA                                                                                               <  1:2008176/91‑1
  ATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTA                                                                                               >  1:1655643/1‑91
  ATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTA                                                                                               <  1:2731591/91‑1
  ATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTA                                                                                               <  1:1450697/91‑1
  ATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTA                                                                                               <  2:1423724/91‑1
  ATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTA                                                                                               <  2:2569971/91‑1
   TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC                                                                                              <  2:2002579/91‑1
   TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC                                                                                              <  2:2144883/91‑1
   TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC                                                                                              <  2:56491/91‑1
   TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC                                                                                              <  1:962103/91‑1
    CAAAGTATCAATACGGCAAAGAGTACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACa                                                                                             <  2:3127154/91‑2
    CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             <  1:1004077/91‑1
    CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             <  1:997063/91‑1
    CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             <  2:371699/91‑1
    CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             <  2:3577389/91‑1
    CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             >  1:1097810/1‑91
    CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             <  2:3240628/91‑1
    CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             <  2:2804062/91‑1
    CAAAGGATCAATACGGCAAAGAATACTTTAAAAGGTATTGGATGTATGTACGCTCTATATAAAAAGAGCCGTAGGTCTCTTCAGATCTACa                                                                                             <  2:1192148/91‑2
     AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG                                                                                            >  2:2116661/1‑91
     AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATAGAAAAAGGACCGTAGTTCTCTTCAGATCTACGG                                                                                            >  1:3317672/1‑91
     AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATACAAAAAGAACCGTAGGTCTCTTCAGATCTACGG                                                                                            >  1:3318037/1‑91
       AGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG                                                                                             >  1:3626640/1‑88
           TCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGATCTGAAGAGACCTACGGTTCTTT                                                                                      <  1:84932/91‑1
           TCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGATCTGAAGAGACCTACGGTTCTTT                                                                                      <  1:135555/91‑1
            CAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGATCTGAAGAGACCTACGGTTCTTTT                                                                                     <  1:1323665/91‑1
                                      GTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATA                                                           <  2:3783451/91‑1
                                                                 AAAAGAACCGCAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTG                                >  1:421382/1‑91
                                                                   AAGAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGAT                              >  1:2844979/1‑91
                                                                   AAGAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGAT                              >  1:132577/1‑91
                                                                    AGAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGCGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATc                             >  1:1450388/1‑90
                                                                     GAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATcc                            >  2:1114942/1‑89
                                                                     GAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATAC                            >  1:2359893/1‑91
                                                                     GAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATAC                            >  1:626019/1‑91
                                                                       ACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTTTTTGCCGTATTGATACTT                          >  1:1085/1‑91
                                                                        CCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTT                         >  1:1962411/1‑91
                                                                         CGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTG                        >  1:1497619/1‑91
                                                                         CGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTG                        >  2:1372298/1‑91
                                                                         CGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTG                        >  2:508297/1‑91
                                                                         CGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTG                        >  2:2019984/1‑91
                                                                         CGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATCGATACTTTG                        >  1:3711544/1‑91
                                                                          GTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGA                       >  1:1069631/1‑91
                                                                          GTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGA                       >  1:2124462/1‑91
                                                                          GTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGA                       >  1:1635771/1‑91
                                                                           TAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGAT                      >  1:1184456/1‑91
                                                                            AGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATA                     >  1:1465934/1‑91
                                                                             GGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAT                    >  1:2467681/1‑91
                                                                             GGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAT                    >  1:3823583/1‑91
                                                                             GGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAT                    >  1:2467850/1‑91
                                                                             GGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAT                    >  2:1051275/1‑91
                                                                              GTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATC                   >  2:293006/1‑91
                                                                              GTCTCTTCAGATCTACGGTTCTTGTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATCCCTTGATATa                   >  2:3584139/1‑90
                                                                               TCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCT                  >  1:2323562/1‑91
                                                                               TCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCT                  >  2:2003298/1‑91
                                                                               TCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTCTAAAGTATTCTTTGCCGTATTGATACTTTGATATCT                  >  2:3052439/1‑91
                                                                               TCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTATAAAGTATTCTTTGCCGTATTGATACTTTGATATCT                  >  2:3053269/1‑91
                                                                                CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT                 >  1:1406227/1‑91
                                                                                CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT                 >  2:2219651/1‑91
                                                                                CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT                 >  2:2873312/1‑91
                                                                                CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT                 >  2:3640888/1‑91
                                                                                 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG                >  2:3523272/1‑91
                                                                                 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG                >  1:1822792/1‑91
                                                                                 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG                >  1:1335945/1‑91
                                                                                 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG                >  2:1374064/1‑91
                                                                                    TCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCT             >  1:2490708/1‑91
                                                                                          CTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTA       >  2:1351186/1‑91
                                                                                          CTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTA       >  2:789980/1‑91
                                                                                           TACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAC      >  1:2074314/1‑91
                                                                                           TACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAC      >  2:2236417/1‑91
                                                                                           TACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAC      >  2:2235885/1‑91
                                                                                           TACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAC      >  1:3009966/1‑91
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACT     >  2:3274168/1‑91
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACT     >  1:708304/1‑91
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACT     >  2:1358752/1‑91
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACT     >  2:3156839/1‑91
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACT     <  1:2515829/91‑1
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACT     <  2:1622193/91‑1
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACT     >  1:3146826/1‑91
                                                                                            ACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCCTGTCTTTCTTACT     >  1:3816706/1‑91
                                                                                             CGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTT    <  2:3553122/91‑1
                                                                                             CGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTT    >  1:418408/1‑91
                                                                                             CGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTT    >  1:418503/1‑91
                                                                                             CGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTT    <  2:869615/91‑1
                                                                                             CGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTCTCTTACTTT   >  2:366417/1‑91
                                                                                              GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTT   >  1:828104/1‑91
                                                                                              GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTT   <  2:592253/91‑1
                                                                                              GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTT   <  2:2568137/91‑1
                                                                                              GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTT   >  1:2510244/1‑91
                                                                                              GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTT   <  1:2746904/91‑1
                                                                                              GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTT   >  1:2766595/1‑91
                                                                                               GTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTA  <  2:731669/91‑1
                                                                                               GTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTACTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTA  >  2:3477021/1‑91
                                                                                                                                                                                          
ATATCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/20534‑20439
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTA  >  CP000731/20463‑20552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.