BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	20439 =	547 (0.980)	63 (0.120)	19/148	NT	11.6%	coding (632/675 nt)	USA300HOU_pUSA300HOUMR0027	IS431mec transposase
*	?	CP000731	20463 =	457 (0.890)	63 (0.120)	19/148	NT	11.6%	coding (608/675 nt)	USA300HOU_pUSA300HOUMR0027	IS431mec transposase

Only 100 of 685 total aligned reads displayed.

TAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAA  >  CP000731/20373‑20553

tAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGt                                                                                            <  1:2782864/91‑1 (MQ=39)

tAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGt                                                                                            <  1:1459325/91‑1 (MQ=39)

 aaTATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGtt                                                                                           <  1:2103780/91‑1 (MQ=38)

 aaTATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGtt                                                                                           <  1:412016/91‑1 (MQ=39)

 aaTATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGtt                                                                                           <  1:1565723/91‑1 (MQ=39)

 aaTATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGtt                                                                                           >  2:3238342/1‑91 (MQ=38)

  gtatcaatacggcaaagaatactttaaaaggtattgaatgtatttacgctctatataaaaagaaCCGTAGATCTGAAGAGACCTACGGTTc                                                                                          >  1:626019‑M1/65‑91 (MQ=255)

   tatatCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACTTACGGTTCt                                                                                         <  1:1943608/91‑1 (MQ=255)

   tatatCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAAAGACCTACGGTTCt                                                                                         >  2:492456/1‑91 (MQ=255)

   gatcaatacggcaaagaatactttaaaaggtattgaatgtatttacgcgctatataaaaagaaCCGTAGATCTGAAGAGACCTACGGTTCt                                                                                         >  1:1450388‑M1/64‑91 (MQ=255)

    atcaatacggcaaagaatactttaaaaggtattgaatgtatttacgctctatataaaaagaaCCGTAGATCTGAAGAGACCTACGGTTCtt                                                                                        >  1:2062287‑M1/63‑91 (MQ=255)

    atatCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCtt                                                                                        >  2:1578315/1‑91 (MQ=39)

       tCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCttttt                                                                                     >  1:1743871/1‑91 (MQ=39)

       tCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCttttt                                                                                     >  1:3553065/1‑91 (MQ=39)

         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGTGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   <  2:1275344/91‑1 (MQ=21)

         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   <  1:2645076/91‑1 (MQ=39)

         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   <  2:2483591/91‑1 (MQ=39)

          tGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtata                                                                                  <  1:1211553/91‑1 (MQ=39)

            tCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtatata                                                                                <  2:741452/91‑1 (MQ=39)

             cAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATag                                                                               <  2:1924363/91‑1 (MQ=38)

                tgtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGc                                                                            <  1:1820739/91‑1 (MQ=38)

                 gtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCg                                                                           >  1:3086565/1‑91 (MQ=39)

                  ttCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGt                                                                          <  2:1321372/91‑1 (MQ=38)

                  ttCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGt                                                                          <  2:844035/91‑1 (MQ=39)

                   tCGTTTAACTTGCTAGCATGATGCTAATTCCGTGGCATGGGGAAAAGCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTa                                                                         <  1:3774499/91‑1 (MQ=255)

                    cGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTtat                                                                                   <  2:2747719/80‑1 (MQ=255)

                    cGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTaa                                                                        >  1:3855140/1‑91 (MQ=39)

                     gTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTaaa                                                                       >  2:2815876/1‑91 (MQ=39)

                     gTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTaaa                                                                       >  2:1143713/1‑91 (MQ=38)

                     gTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTaaa                                                                       >  1:559409/1‑91 (MQ=39)

                      tttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAAt                                                                      >  2:2690581/1‑91 (MQ=39)

                       ttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATa                                                                     >  2:586352/1‑91 (MQ=38)

                        tagcTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATAc                                                                    <  2:1223411/88‑1 (MQ=255)

                        tAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATAc                                                                    <  2:3359130/91‑1 (MQ=39)

                           cTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACAtt                                                                 >  2:185951/1‑91 (MQ=39)

                           cTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACAtt                                                                 >  2:1692743/1‑91 (MQ=37)

                           cTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACAtt                                                                 >  2:656520/1‑91 (MQ=39)

                             tGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCa                                                               >  1:468607/1‑91 (MQ=39)

                              gCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCaa                                                              <  1:1109896/91‑1 (MQ=39)

                               ggtattgaatgtatttacgctctatataaaaagaaccgtagatctgaagagacctacggTTCTTTTTATATAGAGCGTAAATACATTCAAt                                                             <  1:3001830‑M2/32‑1 (MQ=255)

                                tAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATa                                                            <  2:3883434/91‑1 (MQ=37)

                                  gCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATAcc                                                          >  1:3138785/1‑91 (MQ=39)

                                  gCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATAcc                                                          >  2:2515829/1‑91 (MQ=39)

                                  gCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATAcc                                                          >  1:823346/1‑91 (MQ=39)

                                   cATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCt                                                         >  2:3723306/1‑91 (MQ=37)

                                   cATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCt                                                         <  1:3206032/91‑1 (MQ=39)

                                   cATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCt                                                         <  2:413071/91‑1 (MQ=38)

                                     tgatgCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCttt                                                       >  2:2185964/1‑91 (MQ=39)

                                      gatgCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCtttt                                                      <  2:2074331/91‑1 (MQ=39)

                                       atgCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTa                                                     <  2:3173836/91‑1 (MQ=39)

                                          cTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAg                                                  <  1:2849483/91‑1 (MQ=37)

                                          cTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAg                                                  >  2:2567560/1‑91 (MQ=39)

                                           tAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGt                                                 >  1:869615/1‑91 (MQ=37)

                                            aaTTTCGTGGCATGGGGAGAATCCGTAGATCTGAAGAGCCCTACGGTTCTTTTTATATAGGGCGTAAATACATTCAATACCTTTTAAAGTa                                                <  2:1756071/91‑1 (MQ=14)

                                             aTTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTAt                                               >  2:3661631/1‑91 (MQ=39)

                                               ttCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTATGGTTCTTTTTATATAGAGCGTAAATGCATTCAATACCTTTTAAAGTATTc                                             >  2:3609727/1‑91 (MQ=255)

                                                tCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCt                                            >  1:3703855/1‑91 (MQ=39)

                                                 cGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCtt                                           <  2:3778344/91‑1 (MQ=38)

                                                 cGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCtt                                           <  1:2701967/91‑1 (MQ=39)

                                                  gTGGCATGGGGAAAGTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCttt                                          >  2:3299521/1‑91 (MQ=255)

                                                  gTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCttt                                          >  1:3477888/1‑91 (MQ=39)

                                                   tGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTg                                         <  1:979568/91‑1 (MQ=38)

                                                   tGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTg                                         >  1:2012321/1‑91 (MQ=39)

                                                    ggCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGc                                        >  2:2577547/1‑91 (MQ=39)

                                                      cATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCg                                      >  1:291858/1‑91 (MQ=255)

                                                        tGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTa                                    <  1:2968167/91‑1 (MQ=255)

                                                        tGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTa                                    <  2:2138186/91‑1 (MQ=255)

                                                         ggggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTAt                                   <  1:2569830/91‑1 (MQ=255)

                                                          gggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTAtt                                  <  1:2297008/91‑1 (MQ=39)

                                                           ggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTg                                 >  1:1616623/1‑91 (MQ=39)

                                                            gAAAATCCGTAGATCTGCAGAGGCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTCTTCTTTGCCGTATTgc                                >  2:1480439/1‑90 (MQ=11)

                                                               aaTCCGTAGATCTGATGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAGGTATTCTGTGCCGTATTGATAc                             >  2:30246/1‑91 (MQ=255)

                                                               aaTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATAc                             >  2:1629778/1‑91 (MQ=39)

                                                                  CCGTAGATCTGAAGAGACCTACGGTTCTTTTTGTATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACttt                          >  1:3318037‑M1/1‑91 (MQ=255)

                                                                   CGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTg                         <  1:1004077‑M1/91‑1 (MQ=255)

                                                                    gtaggtctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGa                        >  1:1069631‑M2/23‑91 (MQ=255)

                                                                    GTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGa                        <  2:3103650‑M1/91‑1 (MQ=255)

                                                                     TAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGat                       >  2:946551‑M1/1‑91 (MQ=255)

                                                                     TAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGat                       <  2:1423724‑M1/91‑1 (MQ=255)

                                                                      AGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGata                      <  1:2381762‑M1/91‑1 (MQ=255)

                                                                      AGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGata                      <  1:3379193‑M1/91‑1 (MQ=255)

                                                                       ggtctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGatat                     >  2:1051293‑M2/20‑91 (MQ=255)

                                                                       GATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGatat                     <  1:1304216‑M1/91‑1 (MQ=255)

                                                                        gtctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATc                    >  2:293006‑M2/19‑91 (MQ=255)

                                                                        gtctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATc                    >  1:2160065‑M2/19‑91 (MQ=255)

                                                                         tctcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCt                   >  1:2323562‑M2/18‑91 (MQ=255)

                                                                         tCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCt                   <  2:2861151/91‑1 (MQ=255)

                                                                         tCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCt                   <  1:930613/91‑1 (MQ=255)

                                                                         tCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCt                   <  1:2209420/91‑1 (MQ=255)

                                                                          cTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCtt                  >  1:728108/1‑91 (MQ=255)

                                                                           tcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                 >  2:1373911‑M2/16‑91 (MQ=255)

                                                                           tcttcagatctacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                 >  1:1335945‑M2/16‑91 (MQ=255)

                                                                              agagACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtct              <  2:2012321/91‑1 (MQ=255)

                                                                                  aCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctttct          <  1:247751/91‑1 (MQ=255)

                                                                                   ccTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtctttctt         >  2:2309176/1‑91 (MQ=255)

                                                                                     tacggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTAc       >  2:2235885‑M2/6‑91 (MQ=255)

                                                                                       cggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACtt     <  2:3553065‑M2/88‑1 (MQ=255)

                                                                                        ggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACttt    <  1:2746904‑M2/89‑1 (MQ=255)

                                                                                        ggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACttt    >  1:2510244‑M2/3‑91 (MQ=255)

                                                                                         gTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTACTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTa   >  2:3477021‑M2/2‑91 (MQ=255)

TAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAA  >  CP000731/20373‑20553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.