BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	9008 (0.750)	1313 (0.120)	59/150	NT	13.3%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 2949	8679 (0.770)	1313 (0.120)	59/150	NT	13.3%	intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–

Only 100 of 2629 total aligned reads displayed.

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2843‑2937

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAA  <  NC_012417/2949‑2859

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                 <  2:109152/91‑1

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                 >  1:2520852/1‑91

 TTTAGAACGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:1932841/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  2:3698711/1‑91

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:2837646/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  1:938043/1‑91

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  2:1841148/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:2018306/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  1:1542396/1‑91

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  2:2107359/1‑91

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  1:1146884/1‑91

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  2:2576733/1‑91

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               >  1:3332306/1‑91

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               >  2:2897231/1‑91

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               <  1:2704487/91‑1

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               >  2:3242761/1‑91

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               <  2:1660785/91‑1

   TAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                              <  1:1671152/91‑1

    AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             <  1:420847/91‑1

    AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             <  1:2603918/91‑1

    AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             <  1:3830994/91‑1

    AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             <  1:1805700/91‑1

    AGAAAGTTTTATTTATTCATTGGACTTCACATTAATTTATTTAGGTTTAGGGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             <  2:3602498/91‑1

         GTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTT                                                                                        <  1:1284540/91‑1

          TTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTATGAAACTCGTTC                                                                                       <  1:3001149/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  2:3429054/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  2:2346612/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:994684/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  2:2666287/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:2644046/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:1871049/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  2:685496/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAAGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  2:3828518/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  2:1303635/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  1:3072338/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  2:298684/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  1:2459259/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  2:2811635/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  2:1977907/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  2:2177660/91‑1

            TTATTTATTCATTGGTTTTCAAATTAATTTATTTAGGTTTAGAGGGTCAAAAAAAGAAAAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  2:411155/91‑1

             TATTTTTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:2255883/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:1067436/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  2:1909842/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  2:2460310/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:2333733/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:1738664/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:2776360/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:3481939/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGTTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  2:1613377/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:1449434/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  2:1782405/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  2:2022700/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  2:3088671/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:1005959/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:1344334/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:3548106/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:359156/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:3733097/91‑1

              ATTTATTCATTGATTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  2:138251/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  2:1535858/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  >  2:780842/1‑91

                TTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTC                                                                                 <  1:491561/91‑1

                TTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTC                                                                                 <  1:240046/91‑1

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAaaaa                                                                                <  2:3774939/91‑5

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCG                                                                                <  1:2182192/91‑1

                  ATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGT                                                                               <  1:73771/91‑1

                   TTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTT                                                                              <  2:551437/91‑1

                   TTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTT                                                                              <  1:3185908/91‑1

                     CATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTC                                                                            <  2:2714851/91‑1

                         GGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAA                                                                        <  1:1394411/91‑1

                                              AGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTT                                                   <  1:2119941/91‑1

                                                             TAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCTTTTAAAATCATATCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAA                                    <  2:864199/91‑1

                                                                                          GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATG       >  2:493929/1‑91

                                                                                          GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATG       >  1:788028/1‑91

                                                                                          GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATG       >  1:3649073/1‑91

                                                                                          GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATG       <  1:1605192/91‑1

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      >  2:953094/1‑91

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      >  1:3413920/1‑91

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      >  2:608659/1‑91

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      >  2:3166147/1‑91

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      >  1:678868/1‑91

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTCTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      >  2:3488208/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGATCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  1:1481488/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  1:2927820/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     >  1:2066944/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  1:602449/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     >  2:3311385/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     >  1:849943/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  2:1138361/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     >  1:1204775/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  2:1704435/91‑1

                                                                                             ACTCGTTCACACTTGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAAT    >  2:3552073/1‑91

                                                                                             ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAAT    >  1:313281/1‑91

                                                                                             ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAAT    <  1:3260893/91‑1

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  1:558021/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  2:1218374/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  2:1449748/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  2:225302/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAA         <  2:2407063/85‑1

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2843‑2937

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAA  <  NC_012417/2949‑2859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.