BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	9008 (0.750)	1313 (0.120)	59/150	NT	13.3%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 2949	8679 (0.770)	1313 (0.120)	59/150	NT	13.3%	intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–

Only 100 of 14590 total aligned reads displayed.

AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTT  >  NC_012417/2847‑3027

aGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                            <  2:2546244‑M1/91‑1 (MQ=255)

aGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                            <  1:3363423‑M1/91‑1 (MQ=255)

 gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                           >  2:2839536/1‑91 (MQ=255)

  aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGa                                                                                          >  2:3249421/1‑91 (MQ=255)

  aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGa                                                                                          >  1:2197996/1‑91 (MQ=255)

    aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgt                                                                                        <  2:1457770/91‑1 (MQ=255)

       tttatttaTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGtgtg                                                                                     <  2:1997865/91‑1 (MQ=255)

        ttatttatTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcac                                                                                    <  1:2337109‑M1/91‑9 (MQ=255)

          atttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGGGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacac                                                                                  <  1:1992831‑M1/91‑11 (MQ=255)

          atttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacac                                                                                  <  1:1519099‑M1/91‑11 (MQ=255)

          atttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                  <  2:559890/91‑1 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacact                                                                                 <  2:2938177‑M1/91‑12 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacact                                                                                 <  1:2808520‑M1/91‑12 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                 <  2:2608543/91‑1 (MQ=255)

            ttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacactc                                                                                <  2:3006941‑M1/91‑13 (MQ=255)

             tATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAg                                                                               >  2:2407070‑M2/1‑90 (MQ=255)

               ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtt                                                                             >  2:625765‑M2/1‑88 (MQ=255)

                tCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                            >  2:3166147‑M2/1‑87 (MQ=255)

                  aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                          <  2:3786236/91‑1 (MQ=255)

                  aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                          <  2:362022/91‑1 (MQ=255)

                   ttGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttctt                                                                         >  1:1920541/1‑91 (MQ=255)

                    tGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                        <  1:2060786/91‑1 (MQ=255)

                    tGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                        <  2:428754/91‑1 (MQ=255)

                    tGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                        <  1:483437/91‑1 (MQ=255)

                     ggTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                       <  1:1276951/91‑1 (MQ=255)

                     ggTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                       <  1:1851508/91‑1 (MQ=255)

                       ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                     >  1:884315/1‑91 (MQ=255)

                       ttttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                     >  2:2761604/1‑91 (MQ=255)

                        tttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                    <  1:2950438/91‑1 (MQ=255)

                        tttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGAAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                    >  2:3482522/1‑91 (MQ=255)

                         ttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                   <  2:193703/91‑1 (MQ=255)

                         ttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                   >  2:1721297/1‑91 (MQ=255)

                          tCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                  <  1:3500336/91‑1 (MQ=255)

                           cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                 >  2:3859896/1‑91 (MQ=255)

                            acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtcttg                                                                <  1:1141661/91‑1 (MQ=255)

                               ttAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                             >  2:2131804/1‑91 (MQ=255)

                               ttAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                             >  2:2469050/1‑91 (MQ=255)

                               ttAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                             >  1:2474373/1‑91 (MQ=255)

                                 aaTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACT                                                           <  2:3405905‑M1/91‑1 (MQ=255)

                                  atttatttAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTA                                                          >  1:1339556‑M1/1‑91 (MQ=255)

                                    ttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATA                                                        >  2:3322851‑M1/1‑91 (MQ=255)

                                    ttatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATA                                                        >  2:2344835‑M1/1‑91 (MQ=255)

                                     tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGTGTGTGAACGAGTTTCTTCTTGTCTTGATACTATAT                                                       >  2:700506‑M1/1‑91 (MQ=255)

                                     tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATAT                                                       <  1:3848861‑M1/91‑1 (MQ=255)

                                      atttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATA                                                      >  1:1710284‑M1/1‑91 (MQ=255)

                                      atttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATA                                                      >  2:3089256‑M1/1‑91 (MQ=255)

                                       tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                     >  1:1577265/1‑91 (MQ=255)

                                        ttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTATGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                    <  2:769034/91‑1 (MQ=255)

                                             tttAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATaa                                               <  1:689034/91‑1 (MQ=255)

                                               tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                             <  1:613752/91‑1 (MQ=255)

                                               tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                             <  2:1786591/91‑1 (MQ=255)

                                               tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                             >  2:132050/1‑91 (MQ=255)

                                                agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                            <  1:2542939/91‑1 (MQ=255)

                                                agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                            >  1:3700422/1‑91 (MQ=255)

                                                agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                            <  2:26898/91‑1 (MQ=255)

                                                 gagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCg                                           >  1:814521/1‑91 (MQ=255)

                                                   gggTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAt                                         >  2:1164025/1‑91 (MQ=255)

                                                     gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAttt                                       >  2:842029/1‑91 (MQ=255)

                                                     gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAttt                                       <  1:2673601/91‑1 (MQ=255)

                                                      tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                      >  1:2134254/1‑91 (MQ=255)

                                                       cATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                     >  1:3561215/1‑91 (MQ=255)

                                                       cATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                     >  1:2877152/1‑91 (MQ=255)

                                                         tAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAta                                   >  2:1860556‑M2/1‑89 (MQ=255)

                                                          aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAtat                                  >  1:1002681‑M2/1‑88 (MQ=255)

                                                           aaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAtata                                 <  1:752890‑M2/91‑5 (MQ=255)

                                                            aaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAtatat                                <  1:954663‑M2/91‑6 (MQ=255)

                                                             aagaagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAtatata                               <  2:927536‑M2/91‑7 (MQ=255)

                                                                aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAg                            >  1:3776148/1‑91 (MQ=255)

                                                                 agaagGAATAGGTTGTTTTTTGAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaat                           <  1:1464981‑M1/91‑66 (MQ=255)

                                                                 agaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGc                           <  1:2403085/91‑1 (MQ=255)

                                                                    agGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                        >  2:1591928/1‑91 (MQ=255)

                                                                     ggAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                       <  1:1071211/91‑1 (MQ=255)

                                                                     ggAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                       <  2:1091523/91‑1 (MQ=255)

                                                                     ggAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                       >  1:550290/1‑91 (MQ=255)

                                                                      gAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTaa                      >  2:2277992/1‑91 (MQ=255)

                                                                        aTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACt                    >  2:1389223/1‑91 (MQ=255)

                                                                         tAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                   <  2:1525885/91‑1 (MQ=255)

                                                                          aGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGt                  >  1:3015305/1‑91 (MQ=255)

                                                                           ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                 >  2:1660863/1‑91 (MQ=255)

                                                                            gttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTg                >  1:1781483/1‑91 (MQ=255)

                                                                             ttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa               <  1:1205910/91‑1 (MQ=255)

                                                                             ttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa               >  2:123730/1‑91 (MQ=255)

                                                                               gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGata             >  2:2061242/1‑91 (MQ=255)

                                                                               gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGata             >  1:3150572/1‑91 (MQ=255)

                                                                               gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGata             >  1:307982/1‑91 (MQ=255)

                                                                                ttttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGatat            <  2:370818/91‑1 (MQ=255)

                                                                                   tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTAc         <  1:3218549/91‑1 (MQ=255)

                                                                                    ttGAAACGAGTGTGAACGAGTTTCTACTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACa        <  1:3622287/91‑1 (MQ=255)

                                                                                     tGAAACGAGTGTGAACGAgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaat       <  1:1645006‑M2/91‑74 (MQ=255)

                                                                                     tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg       >  1:422228/1‑91 (MQ=255)

                                                                                     tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAg       <  2:2205756/91‑1 (MQ=255)

                                                                                      gAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatg      >  2:493929‑M1/1‑5 (MQ=255)

                                                                                      gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgt      >  1:2740963/1‑91 (MQ=255)

                                                                                       aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatga     >  1:2610102‑M1/1‑4 (MQ=255)

                                                                                       aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatga     >  1:2262235‑M1/1‑4 (MQ=255)

                                                                                       aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatga     >  1:1404123‑M1/1‑4 (MQ=255)

                                                                                       aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg     <  1:3437165/91‑1 (MQ=255)

                                                                                        aaCtcgttcacacaaaataaaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaa    <  2:3550658‑M1/91‑89 (MQ=255)

                                                                                          cGAGTGTGAACGAgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaata  <  1:3288590‑M2/91‑79 (MQ=255)

                                                                                          cGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGttt  >  2:1029574/1‑91 (MQ=255)

AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTT  >  NC_012417/2847‑3027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.