| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 110692 | 280 (1.470) | 13 (0.070) | 5/150 | NT | 5.4% | coding (551/771 nt) | USA300HOU_RS00515 | putative lipoprotein |
| ? | USA300TCH1516_ALE | = 112333 | 192 (1.080) | coding (536/771 nt) | USA300HOU_RS00525 | putative lipoprotein | |||||
GCCGAGTTATTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/110678‑110692‑‑‑‑‑‑‑‑‑‑tcggcACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGATT < USA300TCH1516_ALE/112333‑112244 GCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACT > 1:612128/1‑91GCCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACT > 1:612089/1‑91 CCGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTT > 2:635386/1‑91 CGAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTA > 1:3774725/1‑91 GAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAA > 2:1697897/1‑91 GAGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAA > 1:1686309/1‑91 AGTTATTCGGCACCTCTGGATTATATGAAATATTTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAA > 2:1363544/1‑91 AGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAA > 1:1311931/1‑91 AGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAA > 1:2677825/1‑91 AGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAA > 1:2952372/1‑91 AGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAA > 1:1241162/1‑91 AGTTATTCGGCACCTCTGGATTATATGAAATATCTCCGCCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAA > 1:294138/1‑91 AGTTATTCGGCACCTCTGGATTATATAAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAA > 2:2214109/1‑91 GTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAG > 1:1799649/1‑91 GTTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAG > 2:3860463/1‑91 TTATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGT > 1:2874591/1‑91 TATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTT > 2:1522964/1‑91 TATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTT > 1:374560/1‑91 TATTCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTT > 1:1222951/1‑91 TCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTC > 2:1242871/1‑91 TCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTC > 2:1811775/1‑91 TCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTC > 1:100637/1‑91 TCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTC > 1:3213272/1‑91 TCGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTC > 1:1429794/1‑91 CGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCG < 2:3429084/91‑1 CGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCG > 1:3750438/1‑91 CGGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCG < 1:1019378/91‑1 GGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGA < 2:3781196/91‑1 GGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGA < 2:3116109/91‑1 GGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGA > 1:654697/1‑91 GGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGA > 2:1687368/1‑91 GGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGA > 2:1446235/1‑91 GGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGA > 1:802111/1‑91 GGCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGA > 1:3842896/1‑91 GCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGAT > 2:3314306/1‑91 GCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGAT > 1:2197639/1‑91 GCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGAT > 2:869853/1‑91 GCACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGAT > 2:869872/1‑91 CACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGATT > 2:2136305/1‑91 CACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGATT > 2:2136325/1‑91 CACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGATT < 1:1432801/91‑1 CACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGATT < 2:856101/91‑1 GCCGAGTTATTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/110678‑110692‑‑‑‑‑‑‑‑‑‑tcggcACCTCTGGATTATATGAAATATCTCCGTCTTTATACTTCGACAAATCTTTAAAGTTTCCATATTGAACAAAGAACTTAAAGTTTTCGATT < USA300TCH1516_ALE/112333‑112244 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |