BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 110692	280 (1.470)	13 (0.070)	5/150	NT	5.4%	coding (551/771 nt)	USA300HOU_RS00515	putative lipoprotein
*	?	USA300TCH1516_ALE	= 112333	192 (1.080)	13 (0.070)	5/150	NT	5.4%	coding (536/771 nt)	USA300HOU_RS00525	putative lipoprotein

Only 100 of 263 total aligned reads displayed.

AAATCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACCAACAAATAAAGC  >  USA300TCH1516_ALE/112243‑112423

aaaTCGAAAACTTTAAGTTCTTTGTTCAAGATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGt                                                                                            <  2:2471532/91‑1 (MQ=255)

 aaTCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTg                                                                                           >  2:2136325‑M2/1‑90 (MQ=255)

  aTCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgc                                                                                          >  2:869853‑M2/1‑89 (MQ=255)

  aTCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgc                                                                                          >  2:3314306‑M2/1‑89 (MQ=255)

  aTCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgc                                                                                          >  1:2197639‑M2/1‑89 (MQ=255)

   tCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgcc                                                                                         >  2:1687368‑M2/1‑88 (MQ=255)

   tCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgcc                                                                                         >  2:1446235‑M2/1‑88 (MQ=255)

   tCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgcc                                                                                         >  1:802111‑M2/1‑88 (MQ=255)

     gAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccga                                                                                       >  1:100637‑M2/1‑86 (MQ=255)

      aaaaCTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAg                                                                                      <  2:3863202/91‑1 (MQ=255)

       aaaCTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGt                                                                                     <  2:3159453/91‑1 (MQ=255)

        aaCTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaata                                                                                    >  1:1222951‑M2/1‑83 (MQ=255)

         aCTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTa                                                                                   >  2:1658569/1‑91 (MQ=255)

          cTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaataac                                                                                  >  1:1799649‑M2/1‑81 (MQ=255)

          cTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTAt                                                                                  <  1:1433479/91‑1 (MQ=255)

          cTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTAt                                                                                  <  2:2788962/91‑1 (MQ=255)

           tttAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaataact                                                                                 >  1:1241162‑M2/1‑80 (MQ=255)

           tttAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaataact                                                                                 >  1:2952372‑M2/1‑80 (MQ=255)

           tttAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaataact                                                                                 >  1:2677825‑M2/1‑80 (MQ=255)

           tttAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaataact                                                                                 >  1:1311931‑M2/1‑80 (MQ=255)

            ttAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaataactc                                                                                >  1:1686309‑M2/1‑79 (MQ=255)

             tAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCg                                                                               <  1:2141261/91‑1 (MQ=255)

             tAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCg                                                                               <  1:1565274/91‑1 (MQ=255)

             tAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCg                                                                               <  1:1536869/91‑1 (MQ=255)

             tAAGTTCATTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCg                                                                               <  1:1945986/91‑1 (MQ=255)

              aaGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCgg                                                                              >  2:3829044/1‑91 (MQ=255)

              aaGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCgg                                                                              <  2:2319637/91‑1 (MQ=255)

              aaGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCgg                                                                              <  1:542780/91‑1 (MQ=255)

               aGTTGTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGc                                                                             >  1:3065237/1‑91 (MQ=255)

               aGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTgccgaataactcggc                                                                             >  1:612089‑M2/1‑76 (MQ=255)

               aGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGc                                                                             <  1:300220/91‑1 (MQ=255)

                gTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCt                                                                            >  1:261738/1‑91 (MQ=255)

                  tCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTaa                                                                          <  1:3537450/91‑1 (MQ=255)

                   cTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTaaa                                                                         >  2:2447205/1‑91 (MQ=255)

                   cTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTaaa                                                                         >  2:3563707/1‑91 (MQ=255)

                    tttGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAat                                                                        <  2:1336441/91‑1 (MQ=255)

                     ttGTTCAATATCGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAata                                                                       <  1:3523072/91‑1 (MQ=255)

                        ttCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCAGATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCa                                                                    <  1:3284299/91‑1 (MQ=255)

                          cAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAAt                                                                  >  2:651094/1‑91 (MQ=255)

                           aaTATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAAtt                                                                 <  1:2104874/91‑1 (MQ=255)

                            atatGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTa                                                                >  2:1814640/1‑91 (MQ=255)

                            atatGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTa                                                                >  1:3448166/1‑91 (MQ=255)

                             tatGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTaa                                                               <  2:45457/91‑1 (MQ=255)

                              atGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAAc                                                              <  1:627528/91‑1 (MQ=255)

                              atGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAAc                                                              <  2:2394168/91‑1 (MQ=255)

                                ggAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTa                                                            >  1:408570/1‑91 (MQ=255)

                                ggAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTa                                                            >  1:2710292/1‑91 (MQ=255)

                                 gAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTaa                                                           <  2:309505/91‑1 (MQ=255)

                                 gAAACGTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTaa                                                           <  2:1114965/91‑1 (MQ=255)

                                   aaCTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAatg                                                         <  1:2428255/91‑1 (MQ=255)

                                    aCTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAGCTAatga                                                        >  2:3442934/1‑91 (MQ=255)

                                    aCTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAatga                                                        <  1:3231409/91‑1 (MQ=255)

                                      tttAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAatgatg                                                      <  2:3770847/91‑1 (MQ=255)

                                       ttAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAAtgatga                                                     >  2:1063131/1‑91 (MQ=255)

                                       ttAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAAtgatga                                                     <  2:1405390/91‑1 (MQ=255)

                                       ttAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAAtgatga                                                     >  2:488629/1‑91 (MQ=255)

                                        tAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATgatgat                                                    <  2:1463497/91‑1 (MQ=255)

                                         aaaGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGAtt                                                   >  1:3759321/1‑91 (MQ=255)

                                          aaGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTa                                                  <  1:2985838/91‑1 (MQ=255)

                                           aGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTAc                                                 >  2:2706130/1‑91 (MQ=255)

                                           aGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTAc                                                 >  2:772369/1‑91 (MQ=255)

                                                tGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGt                                            <  1:1405371/91‑1 (MQ=255)

                                                   cGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTaaa                                         >  2:1309964/1‑91 (MQ=40)

                                                    gAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAg                                        <  2:2326858/91‑1 (MQ=40)

                                                      aGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCa                                      >  1:3595626/1‑91 (MQ=40)

                                                      aGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCa                                      >  2:1514415/1‑91 (MQ=40)

                                                      aGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCa                                      >  2:449416/1‑91 (MQ=40)

                                                      aGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCa                                      >  1:720425/1‑91 (MQ=40)

                                                       gTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCaa                                     <  2:1019378/91‑1 (MQ=40)

                                                         ataAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAAtt                                   <  1:31813/91‑1 (MQ=39)

                                                          taAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTa                                  >  1:454298/1‑91 (MQ=39)

                                                           aaaGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTAc                                 >  1:48933/1‑91 (MQ=39)

                                                           aaaGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTAc                                 >  2:2598388/1‑91 (MQ=38)

                                                            aaGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACg                                <  2:3642976/91‑1 (MQ=39)

                                                               aCGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTaa                             <  2:2898848/91‑1 (MQ=255)

                                                                cGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTaaa                            <  2:3468738/91‑1 (MQ=255)

                                                                  gagaTATTTCATATAATCCAGAGGTGCCGAGTAATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAg                          >  2:3804492/1‑91 (MQ=255)

                                                                   agaTATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGa                         <  1:3729100/91‑1 (MQ=255)

                                                                   agaTATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGa                         >  1:227361/1‑91 (MQ=255)

                                                                     atatTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGata                       >  2:2111882/1‑91 (MQ=255)

                                                                     atatTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGata                       >  2:2739866/1‑91 (MQ=255)

                                                                      tatTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGatat                      >  1:2233844/1‑91 (MQ=255)

                                                                        tttCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGa                    >  1:591433/1‑91 (MQ=255)

                                                                        tttCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGa                    <  1:1397241/91‑1 (MQ=255)

                                                                           cATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACAt                 <  1:3652692/91‑1 (MQ=255)

                                                                           cATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACAt                 <  1:3429084/91‑1 (MQ=255)

                                                                            atatAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATa                <  1:1021904/91‑1 (MQ=255)

                                                                            atatAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATa                >  2:1569654/1‑91 (MQ=255)

                                                                            atatAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATa                <  2:1725609/91‑1 (MQ=255)

                                                                             tataATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATAc               <  2:3724686/91‑1 (MQ=255)

                                                                              ataATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATAcc              <  2:1740387/91‑1 (MQ=255)

                                                                              ataATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATAcc              <  1:1670546/91‑1 (MQ=255)

                                                                                  tCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACcaaca          <  1:2486917/91‑1 (MQ=255)

                                                                                  tCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACcaaca          <  1:3094588/91‑1 (MQ=255)

                                                                                   ccAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACcaacaa         <  1:2041932/91‑1 (MQ=255)

                                                                                    cAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACCAACaaa        >  2:1940448/1‑91 (MQ=255)

                                                                                       agGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACCAACAAATaa     <  1:1841092/91‑1 (MQ=255)

                                                                                       agGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACCAACAAATaa     <  1:3800650/91‑1 (MQ=255)

                                                                                         gTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACCAACAAATAAAg   <  1:2739866/91‑1 (MQ=255)

                                                                                          tGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACCAACAAATAAAGc  >  2:2291491/1‑91 (MQ=255)

AAATCGAAAACTTTAAGTTCTTTGTTCAATATGGAAACTTTAAAGATTTGTCGAAGTATAAAGACGGAGATATTTCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAAAGATATGACATACCAACAAATAAAGC  >  USA300TCH1516_ALE/112243‑112423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.