| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 278631 = | 206 (1.080) | 30 (0.180) | 15/140 | NT | 16.5% | intergenic (+226/+88) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB |
| ? | USA300TCH1516_ALE | 278672 = | 124 (0.750) | intergenic (+267/+47) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB | |||||
ATTGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/278730‑278631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACC > USA300TCH1516_ALE/278672‑278760 ATTGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATG < 2:1266715/91‑1 TTGAACGATAAGGGAGTGTGGGACATTTATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGG < 1:1391386/91‑1 TTGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGG > 2:2615853/1‑91 TTGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGG > 1:684937/1‑91 TTGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGG > 2:3426004/1‑91 TTGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGG > 2:3425240/1‑91 TGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGC < 1:293289/91‑1 TGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGC > 2:882519/1‑91 TGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGC > 1:1393196/1‑91 AACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGT > 1:1490632/1‑91 ACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTG > 1:3274923/1‑91 CGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGG < 2:2602533/91‑1 CGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGG < 2:1457539/91‑1 CGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGG < 2:1274076/91‑1 CGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGG < 2:2383688/91‑1 CGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGG < 1:2082826/91‑1 CGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGG > 2:3194154/1‑91 CGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCCTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGG < 1:489944/91‑1 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAACACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 2:198807/91‑1 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 1:883825/91‑1 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 1:587424/91‑1 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 1:1728898/91‑1 ATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT < 2:1619579/91‑1 TAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT > 2:1007965/1‑91 TAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT > 1:1454561/1‑91 TGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGT > 1:2852200/1‑91 AAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCT > 1:1391798/1‑91 AAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCT > 1:1391797/1‑91 AAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCT > 1:1391510/1‑91 AAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTT > 1:2680455/1‑91 AACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAT > 2:449363/1‑91 AACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAT > 1:668245/1‑91 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCG > 1:1083721/1‑91 CACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGT > 1:3284032/1‑91 CACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGT > 1:579483/1‑91 CACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGT > 1:3286920/1‑91 CACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGT > 1:3283986/1‑91 CGCCGAAGTCATCCAATATGCTTCTGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCAGTTATCGCTC > 2:1618204/1‑91 GCCGAAGTCATCCAATATGATTATGGCGTGGATTTTATAGTTGAAGCAGGGCTGAGACACAAATCAATGTCCCACACTCCCTTATCGCTCA > 2:1542518/1‑91 CCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAA > 2:2995461/1‑91 CCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAA > 2:1089193/1‑91 CCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAA > 2:3673072/1‑91 CCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAA > 1:112627/1‑91 CCGAAGTCATCCAATATGATTATGGCGTGGTCTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTCATCGTTCAA > 2:878325/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 2:2551373/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 2:3662043/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 1:1705683/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 2:1961463/1‑91 GAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATC > 1:1679802/1‑91 AAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCG > 1:1098454/1‑91 AGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGT > 2:2192312/1‑91 AGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGT > 2:2193160/1‑91 AGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGT > 2:1851817/1‑91 TCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTC > 1:1669802/1‑91 CCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCG > 2:174299/1‑91 GGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAA > 1:2398585/1‑91 GCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAT < 2:1288687/91‑1 GCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAT < 2:911241/91‑1 GCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAT > 1:785295/1‑91 CGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATA < 1:536256/91‑1 CGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATA > 1:2103883/1‑91 CGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATA < 1:536238/91‑1 CGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATA < 1:536376/91‑1 CGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATA < 1:788277/91‑1 GTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAG < 1:3375094/91‑1 GTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAG > 1:818588/1‑91 GGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGAT > 1:1552092/1‑91 GGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGAT > 2:942715/1‑91 GTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATA > 1:2170166/1‑91 TTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAC > 1:319723/1‑91 TTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACC < 2:2082826/91‑1 ATTGAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/278730‑278631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACC > USA300TCH1516_ALE/278672‑278760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |